Cluster: HRGMv2_1892_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_1892
- CGC Family ID: CGCFAM_00012
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1892_43 | HRGMv2_1892_43_12 | 10876 | 12336 | - | GH1 |
| CAZyme | HRGMv2_1892_43 | HRGMv2_1892_43_13 | 12393 | 13841 | - | GH1 |
| TC | HRGMv2_1892_43 | HRGMv2_1892_43_14 | 13855 | 14181 | - | 4.A.3.2.2 |
| TC | HRGMv2_1892_43 | HRGMv2_1892_43_15 | 14213 | 15451 | - | 4.A.3.2.2 |
Gene ID: HRGMv2_1892_43_12
Type: CAZyme
Location: 10876 - 12336 (-)
Type: CAZyme
Location: 10876 - 12336 (-)
Gene ID: HRGMv2_1892_43_13
Type: CAZyme
Location: 12393 - 13841 (-)
Type: CAZyme
Location: 12393 - 13841 (-)
Gene ID: HRGMv2_1892_43_14
Type: TC
Location: 13855 - 14181 (-)
Type: TC
Location: 13855 - 14181 (-)
Gene ID: HRGMv2_1892_43_15
Type: TC
Location: 14213 - 15451 (-)
Type: TC
Location: 14213 - 15451 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.