Cluster: HRGMv2_1892_CGC8
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1892
- CGC Family ID: CGCFAM_03140
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1892_23 | HRGMv2_1892_23_1 | 114 | 1442 | - | GH4 |
| TF | HRGMv2_1892_23 | HRGMv2_1892_23_2 | 1507 | 3408 | - | HTH_11 |
| TC | HRGMv2_1892_23 | HRGMv2_1892_23_3 | 3419 | 4681 | - | 4.A.3.2.6 |
Gene ID: HRGMv2_1892_23_1
Type: CAZyme
Location: 114 - 1442 (-)
Type: CAZyme
Location: 114 - 1442 (-)
Gene ID: HRGMv2_1892_23_2
Type: TF
Location: 1507 - 3408 (-)
Type: TF
Location: 1507 - 3408 (-)
Gene ID: HRGMv2_1892_23_3
Type: TC
Location: 3419 - 4681 (-)
Type: TC
Location: 3419 - 4681 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_23_1 | vegan > omnivore | 1.28177 | 0.00224 |
| HRGMv2_1892_23_2 | vegan > omnivore | 3.67692 | 0.00224 |
| HRGMv2_1892_23_2 | vegetarian > omnivore | 3.85279 | 0.01332 |