Cluster: HRGMv2_1892_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1892
- CGC Family ID: CGCFAM_09887
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1892_33 | HRGMv2_1892_33_25 | 12763 | 13557 | - | GH25 |
| CAZyme | HRGMv2_1892_33 | HRGMv2_1892_33_26 | 13554 | 14441 | - | GH109 |
| pfam | HRGMv2_1892_33 | HRGMv2_1892_33_27 | 14582 | 15721 | - | Lipase_GDSL | Lipase_GDSL_2 |
| pfam | HRGMv2_1892_33 | HRGMv2_1892_33_28 | 15859 | 16623 | + | Ubie_methyltran | TehB | MetW | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | HRGMv2_1892_33 | HRGMv2_1892_33_29 | 17169 | 18509 | + | 1.A.26.1.3 |
| pfam | HRGMv2_1892_33 | HRGMv2_1892_33_30 | 18596 | 19567 | - | PTA_PTB |
| TC | HRGMv2_1892_33 | HRGMv2_1892_33_31 | 19822 | 21528 | + | 3.A.1.5.32 |
Gene ID: HRGMv2_1892_33_25
Type: CAZyme
Location: 12763 - 13557 (-)
Type: CAZyme
Location: 12763 - 13557 (-)
Gene ID: HRGMv2_1892_33_26
Type: CAZyme
Location: 13554 - 14441 (-)
Type: CAZyme
Location: 13554 - 14441 (-)
Gene ID: HRGMv2_1892_33_27
Type: pfam
Location: 14582 - 15721 (-)
Type: pfam
Location: 14582 - 15721 (-)
Gene ID: HRGMv2_1892_33_28
Type: pfam
Location: 15859 - 16623 (+)
Type: pfam
Location: 15859 - 16623 (+)
Gene ID: HRGMv2_1892_33_29
Type: TC
Location: 17169 - 18509 (+)
Type: TC
Location: 17169 - 18509 (+)
Gene ID: HRGMv2_1892_33_30
Type: pfam
Location: 18596 - 19567 (-)
Type: pfam
Location: 18596 - 19567 (-)
Gene ID: HRGMv2_1892_33_31
Type: TC
Location: 19822 - 21528 (+)
Type: TC
Location: 19822 - 21528 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_33_25 | vegan > omnivore | 1.68453 | 0.00224 |
| HRGMv2_1892_33_25 | vegetarian > omnivore | 3.12187 | 0.01332 |
| HRGMv2_1892_33_26 | vegan > omnivore | 17.79091 | 0.00224 |
| HRGMv2_1892_33_26 | vegetarian > omnivore | 19.07393 | 0.01332 |
| HRGMv2_1892_33_28 | vegan > omnivore | 21.15176 | 0.00224 |
| HRGMv2_1892_33_28 | vegetarian > omnivore | 19.00333 | 0.01332 |
| HRGMv2_1892_33_29 | vegan > omnivore | 1.10833 | 0.00224 |
| HRGMv2_1892_33_30 | vegan > omnivore | 1.52818 | 0.00224 |
| HRGMv2_1892_33_30 | vegetarian > omnivore | 1.64477 | 0.01332 |
| HRGMv2_1892_33_31 | vegan > omnivore | 3.06652 | 0.00224 |
| HRGMv2_1892_33_31 | vegetarian > omnivore | 3.46011 | 0.01332 |