Cluster: HRGMv2_1892_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1892
- CGC Family ID: CGCFAM_09888
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1892_54 | HRGMv2_1892_54_1 | 152 | 1546 | + | GH4 |
| NULL(UNKNOWN) | HRGMv2_1892_54 | HRGMv2_1892_54_2 | 1536 | 1766 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1892_54 | HRGMv2_1892_54_3 | 1766 | 2233 | + | 4.A.3.2.5 |
| TC | HRGMv2_1892_54 | HRGMv2_1892_54_4 | 2357 | 3211 | - | 2.A.115.1.5 |
Gene ID: HRGMv2_1892_54_1
Type: CAZyme
Location: 152 - 1546 (+)
Type: CAZyme
Location: 152 - 1546 (+)
Gene ID: HRGMv2_1892_54_2
Type:
Location: 1536 - 1766 (+)
Type:
Location: 1536 - 1766 (+)
Gene ID: HRGMv2_1892_54_3
Type: TC
Location: 1766 - 2233 (+)
Type: TC
Location: 1766 - 2233 (+)
Gene ID: HRGMv2_1892_54_4
Type: TC
Location: 2357 - 3211 (-)
Type: TC
Location: 2357 - 3211 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.