Genome Details
Selected Rep_genome_ID: HRGMv2_0381
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0381 | 2,636,967 | 93.99% | 1.442% | UK | Europe | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0381_CGC25 | CGCFAM_00016 | Yes | 7 | 3 | host glycan |
| HRGMv2_0381_CGC26 | CGCFAM_00016 | Yes | 10 | 2 | host glycan |
| HRGMv2_0381_CGC19 | CGCFAM_00043 | Yes | 10 | 3 | alpha-glucan |
| HRGMv2_0381_CGC36 | CGCFAM_00075 | Yes | 3 | 1 | |
| HRGMv2_0381_CGC38 | CGCFAM_00095 | Yes | 4 | 3 | |
| HRGMv2_0381_CGC37 | CGCFAM_00175 | Yes | 9 | 5 | alpha-glucan |
| HRGMv2_0381_CGC22 | CGCFAM_00376 | Yes | 3 | 1 | host glycan |
| HRGMv2_0381_CGC18 | CGCFAM_00511 | Yes | 5 | 1 | |
| HRGMv2_0381_CGC6 | CGCFAM_00655 | Yes | 6 | 2 | |
| HRGMv2_0381_CGC3 | CGCFAM_00715 | Yes | 5 | 1 | |
| HRGMv2_0381_CGC13 | CGCFAM_00915 | Yes | 12 | 4 | |
| HRGMv2_0381_CGC34 | CGCFAM_02171 | Yes | 7 | 1 | |
| HRGMv2_0381_CGC30 | CGCFAM_02846 | Yes | 6 | 2 | |
| HRGMv2_0381_CGC17 | CGCFAM_02874 | Yes | 20 | 3 | |
| HRGMv2_0381_CGC10 | CGCFAM_04313 | Yes | 8 | 1 | |
| HRGMv2_0381_CGC23 | CGCFAM_07227 | Yes | 6 | 2 | |
| HRGMv2_0381_CGC33 | CGCFAM_09602 | Yes | 4 | 1 | |
| HRGMv2_0381_CGC9 | CGCFAM_09642 | Yes | 15 | 6 |
Top CAZyme Families