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Cluster: HRGMv2_0381_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0381_12 HRGMv2_0381_12_3 2180 3790 + GH18
pfam HRGMv2_0381_12 HRGMv2_0381_12_4 3876 4745 - Mfa_like_1
peptidase HRGMv2_0381_12 HRGMv2_0381_12_5 4807 6534 - C66.UPW
TC HRGMv2_0381_12 HRGMv2_0381_12_6 6853 8721 + 3.A.16.1.2
STP HRGMv2_0381_12 HRGMv2_0381_12_7 8833 9471 + Nitroreductase
CAZyme HRGMv2_0381_12 HRGMv2_0381_12_8 9674 11869 - GH97
CAZyme HRGMv2_0381_12 HRGMv2_0381_12_9 11898 13652 - GH66
pfam HRGMv2_0381_12 HRGMv2_0381_12_10 13665 15128 - SusE | SusF_SusE | SusF_SusE
TC HRGMv2_0381_12 HRGMv2_0381_12_11 15157 16638 - 8.A.46.1.3
TC HRGMv2_0381_12 HRGMv2_0381_12_12 16652 19669 - 1.B.14.6.1
Gene ID: HRGMv2_0381_12_3
Type: CAZyme
Location: 2180 - 3790 (+)
Gene ID: HRGMv2_0381_12_4
Type: pfam
Location: 3876 - 4745 (-)
Gene ID: HRGMv2_0381_12_5
Type: peptidase
Location: 4807 - 6534 (-)
Gene ID: HRGMv2_0381_12_6
Type: TC
Location: 6853 - 8721 (+)
Gene ID: HRGMv2_0381_12_7
Type: STP
Location: 8833 - 9471 (+)
Gene ID: HRGMv2_0381_12_8
Type: CAZyme
Location: 9674 - 11869 (-)
Gene ID: HRGMv2_0381_12_9
Type: CAZyme
Location: 11898 - 13652 (-)
Gene ID: HRGMv2_0381_12_10
Type: pfam
Location: 13665 - 15128 (-)
Gene ID: HRGMv2_0381_12_11
Type: TC
Location: 15157 - 16638 (-)
Gene ID: HRGMv2_0381_12_12
Type: TC
Location: 16652 - 19669 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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