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Cluster: HRGMv2_0381_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0381_20 HRGMv2_0381_20_7 10555 12345 + GH29
pfam HRGMv2_0381_20 HRGMv2_0381_20_8 12342 13121 + DUF1573
CAZyme HRGMv2_0381_20 HRGMv2_0381_20_9 13118 15391 + GH95
TF HRGMv2_0381_20 HRGMv2_0381_20_10 15739 16365 + HTH_11
STP HRGMv2_0381_20 HRGMv2_0381_20_11 16458 17462 + FecR
TC HRGMv2_0381_20 HRGMv2_0381_20_12 17490 21035 + 1.B.14.6.1
Gene ID: HRGMv2_0381_20_7
Type: CAZyme
Location: 10555 - 12345 (+)
Gene ID: HRGMv2_0381_20_8
Type: pfam
Location: 12342 - 13121 (+)
Gene ID: HRGMv2_0381_20_9
Type: CAZyme
Location: 13118 - 15391 (+)
Gene ID: HRGMv2_0381_20_10
Type: TF
Location: 15739 - 16365 (+)
Gene ID: HRGMv2_0381_20_11
Type: STP
Location: 16458 - 17462 (+)
Gene ID: HRGMv2_0381_20_12
Type: TC
Location: 17490 - 21035 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0381_20_12 vegan > omnivore 1.45243 0.01287

🧭 Explore Read Mapping of CGC

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