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Cluster: HRGMv2_0381_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0381_21 HRGMv2_0381_21_22 23702 27007 + 1.B.14.6.13
TC HRGMv2_0381_21 HRGMv2_0381_21_23 27023 28606 + 8.A.46.2.1
CAZyme HRGMv2_0381_21 HRGMv2_0381_21_24 28627 29757 + GH18
pfam HRGMv2_0381_21 HRGMv2_0381_21_25 29771 31021 + BT_3987-like_N | Laminin_G_3
sulfatase HRGMv2_0381_21 HRGMv2_0381_21_26 31114 32694 + S1_11
CAZyme HRGMv2_0381_21 HRGMv2_0381_21_27 32699 34993 + GH20
CAZyme HRGMv2_0381_21 HRGMv2_0381_21_28 35149 38265 - GH2
Gene ID: HRGMv2_0381_21_22
Type: TC
Location: 23702 - 27007 (+)
Gene ID: HRGMv2_0381_21_23
Type: TC
Location: 27023 - 28606 (+)
Gene ID: HRGMv2_0381_21_24
Type: CAZyme
Location: 28627 - 29757 (+)
Gene ID: HRGMv2_0381_21_25
Type: pfam
Location: 29771 - 31021 (+)
Gene ID: HRGMv2_0381_21_26
Type: sulfatase
Location: 31114 - 32694 (+)
Gene ID: HRGMv2_0381_21_27
Type: CAZyme
Location: 32699 - 34993 (+)
Gene ID: HRGMv2_0381_21_28
Type: CAZyme
Location: 35149 - 38265 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0381_21_22 vegan > omnivore 1.85846 0.01287
HRGMv2_0381_21_23 vegan > omnivore 2.55540 0.01287

🧭 Explore Read Mapping of CGC

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