Cluster: HRGMv2_0381_CGC9
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0381
- CGC Family ID: CGCFAM_09642
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0381_5 | HRGMv2_0381_5_11 | 18695 | 20731 | + | PL12_2 |
| CAZyme | HRGMv2_0381_5 | HRGMv2_0381_5_12 | 20759 | 22759 | + | PL12_2 |
| CAZyme | HRGMv2_0381_5 | HRGMv2_0381_5_13 | 22770 | 23906 | + | PL13 |
| sulfatase | HRGMv2_0381_5 | HRGMv2_0381_5_14 | 24326 | 25969 | - | S1_27 |
| TC | HRGMv2_0381_5 | HRGMv2_0381_5_15 | 26004 | 29162 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0381_5 | HRGMv2_0381_5_16 | 29185 | 31350 | - | SGBP_BT4661-like |
| CAZyme | HRGMv2_0381_5 | HRGMv2_0381_5_17 | 31365 | 34322 | - | PL12_2 |
| CAZyme | HRGMv2_0381_5 | HRGMv2_0381_5_18 | 34351 | 35547 | - | GH88 |
| sulfatase | HRGMv2_0381_5 | HRGMv2_0381_5_19 | 36035 | 36850 | - | S1_4 |
| pfam | HRGMv2_0381_5 | HRGMv2_0381_5_20 | 36867 | 37670 | - | Lactamase_B | Lactamase_B_2 |
| CAZyme | HRGMv2_0381_5 | HRGMv2_0381_5_21 | 37816 | 39807 | + | GH97 |
| NULL(UNKNOWN) | HRGMv2_0381_5 | HRGMv2_0381_5_22 | 39905 | 40198 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0381_5 | HRGMv2_0381_5_23 | 40252 | 43395 | - | 2.A.6.3.6 |
| TC | HRGMv2_0381_5 | HRGMv2_0381_5_24 | 43408 | 44403 | - | 2.A.6.2.25 |
| TC | HRGMv2_0381_5 | HRGMv2_0381_5_25 | 44456 | 45775 | - | 1.B.17.2.10 |
Gene ID: HRGMv2_0381_5_11
Type: CAZyme
Location: 18695 - 20731 (+)
Type: CAZyme
Location: 18695 - 20731 (+)
Gene ID: HRGMv2_0381_5_12
Type: CAZyme
Location: 20759 - 22759 (+)
Type: CAZyme
Location: 20759 - 22759 (+)
Gene ID: HRGMv2_0381_5_13
Type: CAZyme
Location: 22770 - 23906 (+)
Type: CAZyme
Location: 22770 - 23906 (+)
Gene ID: HRGMv2_0381_5_14
Type: sulfatase
Location: 24326 - 25969 (-)
Type: sulfatase
Location: 24326 - 25969 (-)
Gene ID: HRGMv2_0381_5_15
Type: TC
Location: 26004 - 29162 (-)
Type: TC
Location: 26004 - 29162 (-)
Gene ID: HRGMv2_0381_5_16
Type: pfam
Location: 29185 - 31350 (-)
Type: pfam
Location: 29185 - 31350 (-)
Gene ID: HRGMv2_0381_5_17
Type: CAZyme
Location: 31365 - 34322 (-)
Type: CAZyme
Location: 31365 - 34322 (-)
Gene ID: HRGMv2_0381_5_18
Type: CAZyme
Location: 34351 - 35547 (-)
Type: CAZyme
Location: 34351 - 35547 (-)
Gene ID: HRGMv2_0381_5_19
Type: sulfatase
Location: 36035 - 36850 (-)
Type: sulfatase
Location: 36035 - 36850 (-)
Gene ID: HRGMv2_0381_5_20
Type: pfam
Location: 36867 - 37670 (-)
Type: pfam
Location: 36867 - 37670 (-)
Gene ID: HRGMv2_0381_5_21
Type: CAZyme
Location: 37816 - 39807 (+)
Type: CAZyme
Location: 37816 - 39807 (+)
Gene ID: HRGMv2_0381_5_22
Type:
Location: 39905 - 40198 (-)
Type:
Location: 39905 - 40198 (-)
Gene ID: HRGMv2_0381_5_23
Type: TC
Location: 40252 - 43395 (-)
Type: TC
Location: 40252 - 43395 (-)
Gene ID: HRGMv2_0381_5_24
Type: TC
Location: 43408 - 44403 (-)
Type: TC
Location: 43408 - 44403 (-)
Gene ID: HRGMv2_0381_5_25
Type: TC
Location: 44456 - 45775 (-)
Type: TC
Location: 44456 - 45775 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.