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Cluster: HRGMv2_0381_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0381_9 HRGMv2_0381_9_21 21781 22383 - 1.B.44.2.1
TC HRGMv2_0381_9 HRGMv2_0381_9_22 22380 23549 - 2.A.1.7.16
TC HRGMv2_0381_9 HRGMv2_0381_9_23 23873 25987 + 2.A.37.2.5
pfam HRGMv2_0381_9 HRGMv2_0381_9_24 26054 27358 + GTP_EFTU | MMR_HSR1 | MMR_HSR1 | FeoB_N | FeoB_N | AIG1 | KH_dom-like
CAZyme HRGMv2_0381_9 HRGMv2_0381_9_25 27967 30531 - GH84
pfam HRGMv2_0381_9 HRGMv2_0381_9_26 30551 31705 - Acyl_transf_3
TC HRGMv2_0381_9 HRGMv2_0381_9_27 31748 33241 - 1.I.1.1.3
pfam HRGMv2_0381_9 HRGMv2_0381_9_28 33367 34716 - UPF0004 | TRAM | Radical_SAM
TC HRGMv2_0381_9 HRGMv2_0381_9_29 35068 36057 - 2.A.115.1.1
TF HRGMv2_0381_9 HRGMv2_0381_9_30 36227 37372 + HTH_AraC
TC HRGMv2_0381_9 HRGMv2_0381_9_31 37486 38748 + 2.A.1.7.9
CAZyme HRGMv2_0381_9 HRGMv2_0381_9_32 38742 39905 + CE9
pfam HRGMv2_0381_9 HRGMv2_0381_9_33 39907 40668 + Glucosamine_iso
CAZyme HRGMv2_0381_9 HRGMv2_0381_9_34 40683 42221 + GH20
NULL(UNKNOWN) HRGMv2_0381_9 HRGMv2_0381_9_35 42258 43337 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0381_9 HRGMv2_0381_9_36 43344 46418 + 1.B.14.6.1
pfam HRGMv2_0381_9 HRGMv2_0381_9_37 46429 48057 + SusD_RagB | SusD-like_3
pfam HRGMv2_0381_9 HRGMv2_0381_9_38 48073 49737 + BACON
TC HRGMv2_0381_9 HRGMv2_0381_9_39 49943 50674 + 9.B.31.1.2
TC HRGMv2_0381_9 HRGMv2_0381_9_40 51034 52734 + 4.C.1.1.4
Gene ID: HRGMv2_0381_9_21
Type: TC
Location: 21781 - 22383 (-)
Gene ID: HRGMv2_0381_9_22
Type: TC
Location: 22380 - 23549 (-)
Gene ID: HRGMv2_0381_9_23
Type: TC
Location: 23873 - 25987 (+)
Gene ID: HRGMv2_0381_9_24
Type: pfam
Location: 26054 - 27358 (+)
Gene ID: HRGMv2_0381_9_25
Type: CAZyme
Location: 27967 - 30531 (-)
Gene ID: HRGMv2_0381_9_26
Type: pfam
Location: 30551 - 31705 (-)
Gene ID: HRGMv2_0381_9_27
Type: TC
Location: 31748 - 33241 (-)
Gene ID: HRGMv2_0381_9_28
Type: pfam
Location: 33367 - 34716 (-)
Gene ID: HRGMv2_0381_9_29
Type: TC
Location: 35068 - 36057 (-)
Gene ID: HRGMv2_0381_9_30
Type: TF
Location: 36227 - 37372 (+)
Gene ID: HRGMv2_0381_9_31
Type: TC
Location: 37486 - 38748 (+)
Gene ID: HRGMv2_0381_9_32
Type: CAZyme
Location: 38742 - 39905 (+)
Gene ID: HRGMv2_0381_9_33
Type: pfam
Location: 39907 - 40668 (+)
Gene ID: HRGMv2_0381_9_34
Type: CAZyme
Location: 40683 - 42221 (+)
Gene ID: HRGMv2_0381_9_35
Type:
Location: 42258 - 43337 (+)
Gene ID: HRGMv2_0381_9_36
Type: TC
Location: 43344 - 46418 (+)
Gene ID: HRGMv2_0381_9_37
Type: pfam
Location: 46429 - 48057 (+)
Gene ID: HRGMv2_0381_9_38
Type: pfam
Location: 48073 - 49737 (+)
Gene ID: HRGMv2_0381_9_39
Type: TC
Location: 49943 - 50674 (+)
Gene ID: HRGMv2_0381_9_40
Type: TC
Location: 51034 - 52734 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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