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Cluster: HRGMv2_0381_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0381_5 HRGMv2_0381_5_29 50165 52474 - GH89
NULL(UNKNOWN) HRGMv2_0381_5 HRGMv2_0381_5_30 52613 53695 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0381_5 HRGMv2_0381_5_31 53732 55705 - SusD_RagB | SusD-like_3
TC HRGMv2_0381_5 HRGMv2_0381_5_32 55717 58878 - 1.B.14.6.1
pfam HRGMv2_0381_5 HRGMv2_0381_5_33 58933 60105 - GlcNAc_2-epim
TC HRGMv2_0381_5 HRGMv2_0381_5_34 60123 61466 - 2.A.1.1.55
STP HRGMv2_0381_5 HRGMv2_0381_5_35 61697 62947 + HTH_IclR
TC HRGMv2_0381_5 HRGMv2_0381_5_36 63021 63833 - 2.A.17.1.6
Gene ID: HRGMv2_0381_5_29
Type: CAZyme
Location: 50165 - 52474 (-)
Gene ID: HRGMv2_0381_5_30
Type:
Location: 52613 - 53695 (-)
Gene ID: HRGMv2_0381_5_31
Type: pfam
Location: 53732 - 55705 (-)
Gene ID: HRGMv2_0381_5_32
Type: TC
Location: 55717 - 58878 (-)
Gene ID: HRGMv2_0381_5_33
Type: pfam
Location: 58933 - 60105 (-)
Gene ID: HRGMv2_0381_5_34
Type: TC
Location: 60123 - 61466 (-)
Gene ID: HRGMv2_0381_5_35
Type: STP
Location: 61697 - 62947 (+)
Gene ID: HRGMv2_0381_5_36
Type: TC
Location: 63021 - 63833 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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