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Cluster: HRGMv2_0381_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0381_22 HRGMv2_0381_22_13 18817 22203 + 1.B.14.6.13
TC HRGMv2_0381_22 HRGMv2_0381_22_14 22210 23787 + 8.A.46.2.2
pfam HRGMv2_0381_22 HRGMv2_0381_22_15 23802 24812 + GH18_BT1044-like
pfam HRGMv2_0381_22 HRGMv2_0381_22_16 24827 26026 + Pentaxin | BT_3987-like_N | Laminin_G_3
CAZyme HRGMv2_0381_22 HRGMv2_0381_22_17 26072 27538 + GH18
NULL(UNKNOWN) HRGMv2_0381_22 HRGMv2_0381_22_18 27561 28592 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0381_22 HRGMv2_0381_22_19 28760 30811 + GH20
TC HRGMv2_0381_22 HRGMv2_0381_22_20 30955 32181 - 2.A.119.1.2
TF HRGMv2_0381_22 HRGMv2_0381_22_21 32353 32892 - HTH_AraC
TC HRGMv2_0381_22 HRGMv2_0381_22_22 33036 34322 + 2.A.1.35.1
Gene ID: HRGMv2_0381_22_13
Type: TC
Location: 18817 - 22203 (+)
Gene ID: HRGMv2_0381_22_14
Type: TC
Location: 22210 - 23787 (+)
Gene ID: HRGMv2_0381_22_15
Type: pfam
Location: 23802 - 24812 (+)
Gene ID: HRGMv2_0381_22_16
Type: pfam
Location: 24827 - 26026 (+)
Gene ID: HRGMv2_0381_22_17
Type: CAZyme
Location: 26072 - 27538 (+)
Gene ID: HRGMv2_0381_22_18
Type:
Location: 27561 - 28592 (+)
Gene ID: HRGMv2_0381_22_19
Type: CAZyme
Location: 28760 - 30811 (+)
Gene ID: HRGMv2_0381_22_20
Type: TC
Location: 30955 - 32181 (-)
Gene ID: HRGMv2_0381_22_21
Type: TF
Location: 32353 - 32892 (-)
Gene ID: HRGMv2_0381_22_22
Type: TC
Location: 33036 - 34322 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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