Genome Details
Selected Rep_genome_ID: HRGMv2_0323
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes excrementigallinarum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0323 | 2,547,933 | 99.46% | 0% | UK | Europe | HRGM |
| MGYG000004544 | 2,598,681 | 99.52% | 0% | France | Europe | UHGG |
| Rep_622 | 2,675,674 | 99.0385% | 0.480769% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0323_CGC12 | CGCFAM_00016 | Yes | 11 | 5 | host glycan |
| HRGMv2_0323_CGC19 | CGCFAM_00016 | Yes | 6 | 2 | host glycan |
| HRGMv2_0323_CGC24 | CGCFAM_00016 | Yes | 7 | 2 | host glycan |
| HRGMv2_0323_CGC25 | CGCFAM_00016 | Yes | 8 | 2 | host glycan |
| HRGMv2_0323_CGC11 | CGCFAM_00288 | Yes | 3 | 1 | |
| HRGMv2_0323_CGC23 | CGCFAM_00511 | Yes | 10 | 1 | |
| HRGMv2_0323_CGC20 | CGCFAM_00607 | Yes | 10 | 1 | |
| HRGMv2_0323_CGC9 | CGCFAM_00632 | Yes | 8 | 1 | |
| HRGMv2_0323_CGC22 | CGCFAM_00715 | Yes | 6 | 1 | |
| HRGMv2_0323_CGC7 | CGCFAM_00941 | Yes | 9 | 5 | |
| HRGMv2_0323_CGC21 | CGCFAM_01056 | Yes | 4 | 2 | |
| HRGMv2_0323_CGC30 | CGCFAM_01494 | Yes | 9 | 4 | |
| HRGMv2_0323_CGC10 | CGCFAM_03936 | Yes | 4 | 1 | |
| HRGMv2_0323_CGC26 | CGCFAM_03990 | Yes | 5 | 1 | |
| HRGMv2_0323_CGC1 | CGCFAM_09601 | Yes | 7 | 1 | |
| HRGMv2_0323_CGC2 | CGCFAM_09602 | Yes | 4 | 1 | |
| HRGMv2_0323_CGC29 | CGCFAM_09603 | Yes | 8 | 4 | |
| HRGMv2_0323_CGC3 | CGCFAM_09604 | Yes | 5 | 1 |
Top CAZyme Families