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Cluster: HRGMv2_0323_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0323_2 HRGMv2_0323_2_157 193900 197283 + 1.B.14.6.13
TC HRGMv2_0323_2 HRGMv2_0323_2_158 197288 198922 + 8.A.46.2.2
pfam HRGMv2_0323_2 HRGMv2_0323_2_159 198961 200073 + GH18_BT1044-like
pfam HRGMv2_0323_2 HRGMv2_0323_2_160 200070 201257 + BT_3987-like_N | Laminin_G_3
CAZyme HRGMv2_0323_2 HRGMv2_0323_2_161 201278 202702 + GH18
pfam HRGMv2_0323_2 HRGMv2_0323_2_162 202735 204243 + BACON | BACON | BACON_2
pfam HRGMv2_0323_2 HRGMv2_0323_2_163 204442 205788 + MFS_1 | MFS_1
CAZyme HRGMv2_0323_2 HRGMv2_0323_2_164 205848 206858 + GH130_2
CAZyme HRGMv2_0323_2 HRGMv2_0323_2_165 206863 209130 + GH92
CAZyme HRGMv2_0323_2 HRGMv2_0323_2_166 209167 211350 + GH92
CAZyme HRGMv2_0323_2 HRGMv2_0323_2_167 211380 213716 + GH92
Gene ID: HRGMv2_0323_2_157
Type: TC
Location: 193900 - 197283 (+)
Gene ID: HRGMv2_0323_2_158
Type: TC
Location: 197288 - 198922 (+)
Gene ID: HRGMv2_0323_2_159
Type: pfam
Location: 198961 - 200073 (+)
Gene ID: HRGMv2_0323_2_160
Type: pfam
Location: 200070 - 201257 (+)
Gene ID: HRGMv2_0323_2_161
Type: CAZyme
Location: 201278 - 202702 (+)
Gene ID: HRGMv2_0323_2_162
Type: pfam
Location: 202735 - 204243 (+)
Gene ID: HRGMv2_0323_2_163
Type: pfam
Location: 204442 - 205788 (+)
Gene ID: HRGMv2_0323_2_164
Type: CAZyme
Location: 205848 - 206858 (+)
Gene ID: HRGMv2_0323_2_165
Type: CAZyme
Location: 206863 - 209130 (+)
Gene ID: HRGMv2_0323_2_166
Type: CAZyme
Location: 209167 - 211350 (+)
Gene ID: HRGMv2_0323_2_167
Type: CAZyme
Location: 211380 - 213716 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0323_2_163 omnivore > vegan 1.23399 0.04111

🧭 Explore Read Mapping of CGC

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