Cluster: HRGMv2_0323_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: HRGMv2_0323
- CGC Family ID: CGCFAM_00016
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0323_5 | HRGMv2_0323_5_180 | 210873 | 211862 | - | GH18 |
| CAZyme | HRGMv2_0323_5 | HRGMv2_0323_5_181 | 211990 | 213585 | - | GH18 |
| pfam | HRGMv2_0323_5 | HRGMv2_0323_5_182 | 213589 | 214947 | - | BT_3987-like_N | Laminin_G_3 |
| pfam | HRGMv2_0323_5 | HRGMv2_0323_5_183 | 214955 | 215866 | - | GH18_BT1044-like | GH18_BT1044-like |
| TC | HRGMv2_0323_5 | HRGMv2_0323_5_184 | 215872 | 217446 | - | 8.A.46.2.2 |
| TC | HRGMv2_0323_5 | HRGMv2_0323_5_185 | 217459 | 218019 | - | 1.B.14.6.13 |
| TC | HRGMv2_0323_5 | HRGMv2_0323_5_186 | 218020 | 220797 | - | 1.B.14.6.13 |
Gene ID: HRGMv2_0323_5_180
Type: CAZyme
Location: 210873 - 211862 (-)
Type: CAZyme
Location: 210873 - 211862 (-)
Gene ID: HRGMv2_0323_5_181
Type: CAZyme
Location: 211990 - 213585 (-)
Type: CAZyme
Location: 211990 - 213585 (-)
Gene ID: HRGMv2_0323_5_182
Type: pfam
Location: 213589 - 214947 (-)
Type: pfam
Location: 213589 - 214947 (-)
Gene ID: HRGMv2_0323_5_183
Type: pfam
Location: 214955 - 215866 (-)
Type: pfam
Location: 214955 - 215866 (-)
Gene ID: HRGMv2_0323_5_184
Type: TC
Location: 215872 - 217446 (-)
Type: TC
Location: 215872 - 217446 (-)
Gene ID: HRGMv2_0323_5_185
Type: TC
Location: 217459 - 218019 (-)
Type: TC
Location: 217459 - 218019 (-)
Gene ID: HRGMv2_0323_5_186
Type: TC
Location: 218020 - 220797 (-)
Type: TC
Location: 218020 - 220797 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes excrementigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.