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Cluster: HRGMv2_0323_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0323_15 HRGMv2_0323_15_4 4685 7765 - 1.B.14.6.1
CAZyme HRGMv2_0323_15 HRGMv2_0323_15_5 7786 9138 - GH37
CAZyme HRGMv2_0323_15 HRGMv2_0323_15_6 9183 11729 - GH2
pfam HRGMv2_0323_15 HRGMv2_0323_15_7 11763 13328 - SusE
CAZyme HRGMv2_0323_15 HRGMv2_0323_15_8 13670 15676 + GH97
TC HRGMv2_0323_15 HRGMv2_0323_15_9 15676 17022 + 2.A.2.3.5
TF HRGMv2_0323_15 HRGMv2_0323_15_10 17035 17925 + HTH_AraC
CAZyme HRGMv2_0323_15 HRGMv2_0323_15_11 17949 19154 + GH26
TC HRGMv2_0323_15 HRGMv2_0323_15_12 19310 20494 - 2.A.1.36.3
Gene ID: HRGMv2_0323_15_4
Type: TC
Location: 4685 - 7765 (-)
Gene ID: HRGMv2_0323_15_5
Type: CAZyme
Location: 7786 - 9138 (-)
Gene ID: HRGMv2_0323_15_6
Type: CAZyme
Location: 9183 - 11729 (-)
Gene ID: HRGMv2_0323_15_7
Type: pfam
Location: 11763 - 13328 (-)
Gene ID: HRGMv2_0323_15_8
Type: CAZyme
Location: 13670 - 15676 (+)
Gene ID: HRGMv2_0323_15_9
Type: TC
Location: 15676 - 17022 (+)
Gene ID: HRGMv2_0323_15_10
Type: TF
Location: 17035 - 17925 (+)
Gene ID: HRGMv2_0323_15_11
Type: CAZyme
Location: 17949 - 19154 (+)
Gene ID: HRGMv2_0323_15_12
Type: TC
Location: 19310 - 20494 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0323_15_4 vegan > omnivore 1.92389 0.00863
HRGMv2_0323_15_4 vegetarian > omnivore 1.80429 0.02118
HRGMv2_0323_15_5 vegan > omnivore 2.34503 0.00863
HRGMv2_0323_15_5 vegetarian > omnivore 1.85876 0.02118

🧭 Explore Read Mapping of CGC

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