Genome Details
Selected Rep_genome_ID: HRGMv2_0244
Total Genomes Found: 14
Total Genomes Found: 14
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900290275
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG471_58 | 3,831,125 | 99.63% | 0% | NA | Africa | H3AfricaPhase2 |
| C104.bin_4 | 4,160,052 | 98.02% | 0.12% | China(Inner Mongolia) | Asia | IMGG |
| CGMR089320 | 2,850,167 | 94.65% | 0% | China | Asia | CGMR |
| GCF_021614955.1_ASM2161495v1_genomic | 2,982,601 | 98.41% | 0.39% | NA | Africa | H3AfricaPhase1 |
| GCF_021621105.1_ASM2162110v1_genomic | 2,916,097 | 94.09% | 0.25% | NA | Africa | H3AfricaPhase1 |
| GCF_021622545.1_ASM2162254v1_genomic | 2,681,078 | 93.34% | 0.29% | NA | Africa | H3AfricaPhase1 |
| GCF_021622745.1_ASM2162274v1_genomic | 2,941,991 | 93.21% | 2% | NA | Africa | H3AfricaPhase1 |
| GCF_021628295.1_ASM2162829v1_genomic | 2,958,084 | 97.82% | 1.65% | NA | Africa | H3AfricaPhase1 |
| GCF_021631735.1_ASM2163173v1_genomic | 4,236,778 | 99.26% | 1.33% | NA | Africa | H3AfricaPhase1 |
| HRGMv2_0244 | 3,198,771 | 99.62% | 0% | Malaysia | Asia | HRGM |
| MGYG000002108 | 2,842,572 | 96.91% | 0% | Mongolia | Asia | UHGG |
| Rep_211 | 4,062,873 | 99.6296% | 0.601852% | NA | NA | WIS |
| SPMP04_bin.44 | 2,948,579 | 91.65% | 0.48% | Singapore | Asia | SPMP |
| SPMP16_bin.53 | 3,244,676 | 95.81% | 0.86% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0244_CGC19 | CGCFAM_00001 | Yes | 7 | 2 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| HRGMv2_0244_CGC11 | CGCFAM_00003 | Yes | 8 | 1 | |
| HRGMv2_0244_CGC8 | CGCFAM_00017 | Yes | 10 | 2 | fructan |
| HRGMv2_0244_CGC7 | CGCFAM_00031 | Yes | 10 | 3 | pectin/galactan |
| HRGMv2_0244_CGC22 | CGCFAM_00072 | Yes | 5 | 2 | |
| HRGMv2_0244_CGC34 | CGCFAM_00095 | Yes | 4 | 1 | |
| HRGMv2_0244_CGC5 | CGCFAM_00108 | Yes | 6 | 3 | pectin |
| HRGMv2_0244_CGC18 | CGCFAM_00143 | Yes | 3 | 1 | |
| HRGMv2_0244_CGC25 | CGCFAM_00254 | Yes | 7 | 3 | |
| HRGMv2_0244_CGC12 | CGCFAM_00604 | Yes | 16 | 1 | |
| HRGMv2_0244_CGC24 | CGCFAM_00773 | Yes | 4 | 1 | |
| HRGMv2_0244_CGC14 | CGCFAM_00776 | Yes | 10 | 3 | |
| HRGMv2_0244_CGC16 | CGCFAM_01162 | Yes | 4 | 1 | |
| HRGMv2_0244_CGC10 | CGCFAM_01645 | Yes | 7 | 2 | |
| HRGMv2_0244_CGC15 | CGCFAM_02299 | Yes | 8 | 4 | beta-glucan |
| HRGMv2_0244_CGC28 | CGCFAM_03063 | Yes | 13 | 5 | |
| HRGMv2_0244_CGC9 | CGCFAM_03064 | Yes | 4 | 1 | |
| HRGMv2_0244_CGC26 | CGCFAM_03073 | Yes | 5 | 2 | |
| HRGMv2_0244_CGC32 | CGCFAM_05961 | Yes | 3 | 1 | |
| HRGMv2_0244_CGC27 | CGCFAM_09552 | Yes | 3 | 1 |
Top CAZyme Families