Cluster: HRGMv2_0244_CGC28
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0244
- CGC Family ID: CGCFAM_03063
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0244_40 | HRGMv2_0244_40_3 | 2947 | 5277 | - | 3.A.11.3.1 |
| TC | HRGMv2_0244_40 | HRGMv2_0244_40_4 | 5296 | 5937 | - | 1.B.44.2.1 |
| pfam | HRGMv2_0244_40 | HRGMv2_0244_40_5 | 5969 | 7021 | - | GldN |
| TC | HRGMv2_0244_40 | HRGMv2_0244_40_6 | 7049 | 8593 | - | 9.A.25.1.1 |
| pfam | HRGMv2_0244_40 | HRGMv2_0244_40_7 | 8594 | 9424 | - | GldL_N |
| TC | HRGMv2_0244_40 | HRGMv2_0244_40_8 | 9444 | 10868 | - | 9.A.25.1.1 |
| pfam | HRGMv2_0244_40 | HRGMv2_0244_40_9 | 10916 | 11824 | - | PorP_SprF |
| CAZyme | HRGMv2_0244_40 | HRGMv2_0244_40_10 | 12224 | 14272 | - | GH13_6 |
| CAZyme | HRGMv2_0244_40 | HRGMv2_0244_40_11 | 14316 | 16274 | - | GH13_46 |
| CAZyme | HRGMv2_0244_40 | HRGMv2_0244_40_12 | 16453 | 18375 | - | GH13_14 |
| CAZyme | HRGMv2_0244_40 | HRGMv2_0244_40_13 | 18485 | 21229 | - | GH77 |
| peptidase | HRGMv2_0244_40 | HRGMv2_0244_40_14 | 21497 | 23200 | - | M06.UPW |
| CAZyme | HRGMv2_0244_40 | HRGMv2_0244_40_15 | 23221 | 24420 | - | GH25 |
Gene ID: HRGMv2_0244_40_3
Type: TC
Location: 2947 - 5277 (-)
Type: TC
Location: 2947 - 5277 (-)
Gene ID: HRGMv2_0244_40_4
Type: TC
Location: 5296 - 5937 (-)
Type: TC
Location: 5296 - 5937 (-)
Gene ID: HRGMv2_0244_40_5
Type: pfam
Location: 5969 - 7021 (-)
Type: pfam
Location: 5969 - 7021 (-)
Gene ID: HRGMv2_0244_40_6
Type: TC
Location: 7049 - 8593 (-)
Type: TC
Location: 7049 - 8593 (-)
Gene ID: HRGMv2_0244_40_7
Type: pfam
Location: 8594 - 9424 (-)
Type: pfam
Location: 8594 - 9424 (-)
Gene ID: HRGMv2_0244_40_8
Type: TC
Location: 9444 - 10868 (-)
Type: TC
Location: 9444 - 10868 (-)
Gene ID: HRGMv2_0244_40_9
Type: pfam
Location: 10916 - 11824 (-)
Type: pfam
Location: 10916 - 11824 (-)
Gene ID: HRGMv2_0244_40_10
Type: CAZyme
Location: 12224 - 14272 (-)
Type: CAZyme
Location: 12224 - 14272 (-)
Gene ID: HRGMv2_0244_40_11
Type: CAZyme
Location: 14316 - 16274 (-)
Type: CAZyme
Location: 14316 - 16274 (-)
Gene ID: HRGMv2_0244_40_12
Type: CAZyme
Location: 16453 - 18375 (-)
Type: CAZyme
Location: 16453 - 18375 (-)
Gene ID: HRGMv2_0244_40_13
Type: CAZyme
Location: 18485 - 21229 (-)
Type: CAZyme
Location: 18485 - 21229 (-)
Gene ID: HRGMv2_0244_40_14
Type: peptidase
Location: 21497 - 23200 (-)
Type: peptidase
Location: 21497 - 23200 (-)
Gene ID: HRGMv2_0244_40_15
Type: CAZyme
Location: 23221 - 24420 (-)
Type: CAZyme
Location: 23221 - 24420 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella merdae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.