Genome Details
Selected Rep_genome_ID: HRGMv2_0162
Total Genomes Found: 11
Total Genomes Found: 11
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000434975
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR047198 | 2,343,191 | 90.19% | 0% | China | Asia | CGMR |
| GCF_021620505.1_ASM2162050v1_genomic | 2,684,121 | 95.91% | 0.12% | NA | Africa | H3AfricaPhase1 |
| GCF_021620945.1_ASM2162094v1_genomic | 2,677,101 | 95.25% | 0.12% | NA | Africa | H3AfricaPhase1 |
| GCF_021621565.1_ASM2162156v1_genomic | 2,645,598 | 92.96% | 0% | NA | Africa | H3AfricaPhase1 |
| GCF_021634285.1_ASM2163428v1_genomic | 2,768,597 | 94.51% | 0.68% | NA | Africa | H3AfricaPhase1 |
| GCF_021639905.1_ASM2163990v1_genomic | 3,032,077 | 97.39% | 0.59% | NA | Africa | H3AfricaPhase1 |
| GH128_86 | 4,028,879 | 99.17% | 0% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_0162 | 3,309,951 | 99.25% | 0% | US | North America | HRGM |
| MGYG000001763 | 2,771,387 | 99.07% | 0% | Denmark | Europe | UHGG |
| Rep_215 | 3,316,026 | 99.2593% | 0.37037% | NA | NA | WIS |
| ShaoY_2019_ERR3406270_bin.6 | 2,959,370 | 97.5% | 0% | UK | Europe | ELGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0162_CGC24 | CGCFAM_00031 | Yes | 15 | 3 | pectin/galactan |
| HRGMv2_0162_CGC4 | CGCFAM_00152 | Yes | 13 | 6 | |
| HRGMv2_0162_CGC16 | CGCFAM_00376 | Yes | 4 | 2 | host glycan |
| HRGMv2_0162_CGC9 | CGCFAM_00548 | Yes | 11 | 4 | |
| HRGMv2_0162_CGC20 | CGCFAM_00604 | Yes | 7 | 3 | |
| HRGMv2_0162_CGC22 | CGCFAM_00791 | Yes | 8 | 5 | |
| HRGMv2_0162_CGC27 | CGCFAM_03061 | Yes | 5 | 2 | |
| HRGMv2_0162_CGC2 | CGCFAM_03062 | Yes | 11 | 2 | |
| HRGMv2_0162_CGC31 | CGCFAM_04332 | Yes | 10 | 1 | |
| HRGMv2_0162_CGC18 | CGCFAM_04334 | Yes | 9 | 5 | |
| HRGMv2_0162_CGC23 | CGCFAM_04971 | Yes | 5 | 2 | |
| HRGMv2_0162_CGC25 | CGCFAM_06677 | Yes | 3 | 1 | |
| HRGMv2_0162_CGC19 | CGCFAM_09474 | Yes | 11 | 3 |
Top CAZyme Families