Cluster: HRGMv2_0162_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0162
- CGC Family ID: CGCFAM_00152
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0162_2 | HRGMv2_0162_2_54 | 77563 | 79851 | - | GH92 |
| pfam | HRGMv2_0162_2 | HRGMv2_0162_2_55 | 79998 | 82103 | + | PorZ_N_b_propeller |
| CAZyme | HRGMv2_0162_2 | HRGMv2_0162_2_56 | 82116 | 82826 | + | GT2 |
| CAZyme | HRGMv2_0162_2 | HRGMv2_0162_2_57 | 82863 | 83771 | + | GT2 |
| CAZyme | HRGMv2_0162_2 | HRGMv2_0162_2_58 | 83776 | 84861 | + | GT4 |
| pfam | HRGMv2_0162_2 | HRGMv2_0162_2_59 | 84983 | 86167 | - | Glyco_trans_1_2 |
| pfam | HRGMv2_0162_2 | HRGMv2_0162_2_60 | 86272 | 87150 | - | Metallophos |
| CAZyme | HRGMv2_0162_2 | HRGMv2_0162_2_61 | 87324 | 88931 | - | GH63 |
| pfam | HRGMv2_0162_2 | HRGMv2_0162_2_62 | 88944 | 90089 | - | Alk_phosphatase | Alk_phosphatase | Metalloenzyme |
| CAZyme | HRGMv2_0162_2 | HRGMv2_0162_2_63 | 90345 | 92636 | + | GH20 |
| pfam | HRGMv2_0162_2 | HRGMv2_0162_2_64 | 92715 | 94166 | + | Metallophos | PA14 |
| pfam | HRGMv2_0162_2 | HRGMv2_0162_2_65 | 94467 | 96122 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0162_2 | HRGMv2_0162_2_66 | 96144 | 99353 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0162_2_54
Type: CAZyme
Location: 77563 - 79851 (-)
Type: CAZyme
Location: 77563 - 79851 (-)
Gene ID: HRGMv2_0162_2_55
Type: pfam
Location: 79998 - 82103 (+)
Type: pfam
Location: 79998 - 82103 (+)
Gene ID: HRGMv2_0162_2_56
Type: CAZyme
Location: 82116 - 82826 (+)
Type: CAZyme
Location: 82116 - 82826 (+)
Gene ID: HRGMv2_0162_2_57
Type: CAZyme
Location: 82863 - 83771 (+)
Type: CAZyme
Location: 82863 - 83771 (+)
Gene ID: HRGMv2_0162_2_58
Type: CAZyme
Location: 83776 - 84861 (+)
Type: CAZyme
Location: 83776 - 84861 (+)
Gene ID: HRGMv2_0162_2_59
Type: pfam
Location: 84983 - 86167 (-)
Type: pfam
Location: 84983 - 86167 (-)
Gene ID: HRGMv2_0162_2_60
Type: pfam
Location: 86272 - 87150 (-)
Type: pfam
Location: 86272 - 87150 (-)
Gene ID: HRGMv2_0162_2_61
Type: CAZyme
Location: 87324 - 88931 (-)
Type: CAZyme
Location: 87324 - 88931 (-)
Gene ID: HRGMv2_0162_2_62
Type: pfam
Location: 88944 - 90089 (-)
Type: pfam
Location: 88944 - 90089 (-)
Gene ID: HRGMv2_0162_2_63
Type: CAZyme
Location: 90345 - 92636 (+)
Type: CAZyme
Location: 90345 - 92636 (+)
Gene ID: HRGMv2_0162_2_64
Type: pfam
Location: 92715 - 94166 (+)
Type: pfam
Location: 92715 - 94166 (+)
Gene ID: HRGMv2_0162_2_65
Type: pfam
Location: 94467 - 96122 (-)
Type: pfam
Location: 94467 - 96122 (-)
Gene ID: HRGMv2_0162_2_66
Type: TC
Location: 96144 - 99353 (-)
Type: TC
Location: 96144 - 99353 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000434975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.