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Cluster: HRGMv2_0162_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0162_23 HRGMv2_0162_23_1 728 2656 - 3.A.3.5.18
TC HRGMv2_0162_23 HRGMv2_0162_23_2 2729 3943 - 2.A.1.35.1
NULL(UNKNOWN) HRGMv2_0162_23 HRGMv2_0162_23_3 4095 4184 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_0162_23 HRGMv2_0162_23_4 4345 5217 - PfkB
TC HRGMv2_0162_23 HRGMv2_0162_23_5 5430 6644 - 2.A.1.7.17
pfam HRGMv2_0162_23 HRGMv2_0162_23_6 6895 8634 - SusD_RagB | SusD-like_3
TC HRGMv2_0162_23 HRGMv2_0162_23_7 8685 11801 - 1.B.14.6.1
TF HRGMv2_0162_23 HRGMv2_0162_23_8 11973 14201 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_0162_23 HRGMv2_0162_23_9 14428 16152 + GH32
TF HRGMv2_0162_23 HRGMv2_0162_23_10 16198 19647 - HTH_AraC
TC HRGMv2_0162_23 HRGMv2_0162_23_11 19933 22905 + 1.B.14.6.1
TC HRGMv2_0162_23 HRGMv2_0162_23_12 23198 24772 + 8.A.46.1.1
pfam HRGMv2_0162_23 HRGMv2_0162_23_13 24848 26248 + SusE | DUF5111 | DUF5114
CAZyme HRGMv2_0162_23 HRGMv2_0162_23_14 26382 27425 + GH53
CAZyme HRGMv2_0162_23 HRGMv2_0162_23_15 27603 29972 + GH2
Gene ID: HRGMv2_0162_23_1
Type: TC
Location: 728 - 2656 (-)
Gene ID: HRGMv2_0162_23_2
Type: TC
Location: 2729 - 3943 (-)
Gene ID: HRGMv2_0162_23_3
Type:
Location: 4095 - 4184 (+)
Gene ID: HRGMv2_0162_23_4
Type: STP
Location: 4345 - 5217 (-)
Gene ID: HRGMv2_0162_23_5
Type: TC
Location: 5430 - 6644 (-)
Gene ID: HRGMv2_0162_23_6
Type: pfam
Location: 6895 - 8634 (-)
Gene ID: HRGMv2_0162_23_7
Type: TC
Location: 8685 - 11801 (-)
Gene ID: HRGMv2_0162_23_8
Type: TF
Location: 11973 - 14201 (-)
Gene ID: HRGMv2_0162_23_9
Type: CAZyme
Location: 14428 - 16152 (+)
Gene ID: HRGMv2_0162_23_10
Type: TF
Location: 16198 - 19647 (-)
Gene ID: HRGMv2_0162_23_11
Type: TC
Location: 19933 - 22905 (+)
Gene ID: HRGMv2_0162_23_12
Type: TC
Location: 23198 - 24772 (+)
Gene ID: HRGMv2_0162_23_13
Type: pfam
Location: 24848 - 26248 (+)
Gene ID: HRGMv2_0162_23_14
Type: CAZyme
Location: 26382 - 27425 (+)
Gene ID: HRGMv2_0162_23_15
Type: CAZyme
Location: 27603 - 29972 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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