Cluster: HRGMv2_0162_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0162
- CGC Family ID: CGCFAM_00604
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0162_16 | HRGMv2_0162_16_18 | 20804 | 21685 | + | GT92 |
| NULL(UNKNOWN) | HRGMv2_0162_16 | HRGMv2_0162_16_19 | 21742 | 22530 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0162_16 | HRGMv2_0162_16_20 | 22545 | 23474 | + | Stealth_CR2 | Stealth_CR1 |
| CAZyme | HRGMv2_0162_16 | HRGMv2_0162_16_21 | 23534 | 24568 | - | GT2 |
| CAZyme | HRGMv2_0162_16 | HRGMv2_0162_16_22 | 24657 | 26447 | - | GH123 |
| TC | HRGMv2_0162_16 | HRGMv2_0162_16_23 | 26659 | 27624 | - | 3.A.2.1.7 |
| TC | HRGMv2_0162_16 | HRGMv2_0162_16_24 | 27631 | 29217 | - | 3.A.2.1.3 |
Gene ID: HRGMv2_0162_16_18
Type: CAZyme
Location: 20804 - 21685 (+)
Type: CAZyme
Location: 20804 - 21685 (+)
Gene ID: HRGMv2_0162_16_19
Type:
Location: 21742 - 22530 (+)
Type:
Location: 21742 - 22530 (+)
Gene ID: HRGMv2_0162_16_20
Type: pfam
Location: 22545 - 23474 (+)
Type: pfam
Location: 22545 - 23474 (+)
Gene ID: HRGMv2_0162_16_21
Type: CAZyme
Location: 23534 - 24568 (-)
Type: CAZyme
Location: 23534 - 24568 (-)
Gene ID: HRGMv2_0162_16_22
Type: CAZyme
Location: 24657 - 26447 (-)
Type: CAZyme
Location: 24657 - 26447 (-)
Gene ID: HRGMv2_0162_16_23
Type: TC
Location: 26659 - 27624 (-)
Type: TC
Location: 26659 - 27624 (-)
Gene ID: HRGMv2_0162_16_24
Type: TC
Location: 27631 - 29217 (-)
Type: TC
Location: 27631 - 29217 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp000434975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.