Genome Details
Selected Rep_genome_ID: HRGMv2_0080
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetia
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG438_maxbin.051 | 2,136,799 | 95.84% | 2.73% | NA | Africa | H3AfricaPhase2 |
| CGMR058519 | 1,959,225 | 97.87% | 0.95% | China | Asia | CGMR |
| HRGMv2_0080 | 1,991,974 | 99.28% | 0.947% | South Korea | Asia | HRGM |
| MGYG000004314 | 2,027,678 | 99.29% | 0.95% | Israel | Asia | UHGG |
| Rep_1804 | 1,983,399 | 99.2891% | 0.947867% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0080_CGC1 | CGCFAM_00235 | Yes | 3 | 1 | |
| HRGMv2_0080_CGC17 | CGCFAM_00914 | Yes | 4 | 1 | |
| HRGMv2_0080_CGC14 | CGCFAM_00954 | Yes | 6 | 1 | |
| HRGMv2_0080_CGC11 | CGCFAM_01028 | Yes | 4 | 1 | |
| HRGMv2_0080_CGC18 | CGCFAM_01719 | Yes | 4 | 1 | |
| HRGMv2_0080_CGC4 | CGCFAM_02666 | Yes | 10 | 1 | |
| HRGMv2_0080_CGC12 | CGCFAM_02705 | Yes | 25 | 2 | |
| HRGMv2_0080_CGC9 | CGCFAM_03530 | Yes | 7 | 1 | |
| HRGMv2_0080_CGC19 | CGCFAM_09485 | Yes | 4 | 1 |
Top CAZyme Families