Cluster: HRGMv2_0080_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- CGC Family ID: CGCFAM_03530
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0080_4 | HRGMv2_0080_4_159 | 193683 | 198812 | - | 2.A.7.3.49 |
| pfam | HRGMv2_0080_4 | HRGMv2_0080_4_160 | 199118 | 199678 | - | DNA_binding_1 | Methyltransf_1N |
| pfam | HRGMv2_0080_4 | HRGMv2_0080_4_161 | 199724 | 201028 | - | AAA_14 | DUF4143 |
| TC | HRGMv2_0080_4 | HRGMv2_0080_4_162 | 201361 | 201591 | + | 4.A.1.1.5 |
| pfam | HRGMv2_0080_4 | HRGMv2_0080_4_163 | 201604 | 202374 | + | Hydrolase | HAD_2 |
| CAZyme | HRGMv2_0080_4 | HRGMv2_0080_4_164 | 202425 | 204602 | - | GH77 |
| TC | HRGMv2_0080_4 | HRGMv2_0080_4_165 | 204663 | 206354 | - | 3.A.1.120.6 |
Gene ID: HRGMv2_0080_4_159
Type: TC
Location: 193683 - 198812 (-)
Type: TC
Location: 193683 - 198812 (-)
Gene ID: HRGMv2_0080_4_160
Type: pfam
Location: 199118 - 199678 (-)
Type: pfam
Location: 199118 - 199678 (-)
Gene ID: HRGMv2_0080_4_161
Type: pfam
Location: 199724 - 201028 (-)
Type: pfam
Location: 199724 - 201028 (-)
Gene ID: HRGMv2_0080_4_162
Type: TC
Location: 201361 - 201591 (+)
Type: TC
Location: 201361 - 201591 (+)
Gene ID: HRGMv2_0080_4_163
Type: pfam
Location: 201604 - 202374 (+)
Type: pfam
Location: 201604 - 202374 (+)
Gene ID: HRGMv2_0080_4_164
Type: CAZyme
Location: 202425 - 204602 (-)
Type: CAZyme
Location: 202425 - 204602 (-)
Gene ID: HRGMv2_0080_4_165
Type: TC
Location: 204663 - 206354 (-)
Type: TC
Location: 204663 - 206354 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.