Cluster: HRGMv2_0080_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- CGC Family ID: CGCFAM_00914
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0080_10 | HRGMv2_0080_10_31 | 36503 | 37702 | + | GH179 |
| TC | HRGMv2_0080_10 | HRGMv2_0080_10_32 | 37735 | 39387 | + | 2.A.1.1.26 |
| NULL(UNKNOWN) | HRGMv2_0080_10 | HRGMv2_0080_10_33 | 39375 | 39830 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0080_10 | HRGMv2_0080_10_34 | 40078 | 40833 | - | 2.A.102.2.5 |
Gene ID: HRGMv2_0080_10_31
Type: CAZyme
Location: 36503 - 37702 (+)
Type: CAZyme
Location: 36503 - 37702 (+)
Gene ID: HRGMv2_0080_10_32
Type: TC
Location: 37735 - 39387 (+)
Type: TC
Location: 37735 - 39387 (+)
Gene ID: HRGMv2_0080_10_33
Type:
Location: 39375 - 39830 (-)
Type:
Location: 39375 - 39830 (-)
Gene ID: HRGMv2_0080_10_34
Type: TC
Location: 40078 - 40833 (-)
Type: TC
Location: 40078 - 40833 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.