Cluster: HRGMv2_0080_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- CGC Family ID: CGCFAM_09485
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0080_11 | HRGMv2_0080_11_21 | 22297 | 23133 | - | GT81 |
| pfam | HRGMv2_0080_11 | HRGMv2_0080_11_22 | 23431 | 25140 | + | PQQ_2 |
| TC | HRGMv2_0080_11 | HRGMv2_0080_11_23 | 25101 | 26111 | - | 3.A.1.19.3 |
| TC | HRGMv2_0080_11 | HRGMv2_0080_11_24 | 26111 | 27739 | - | 3.A.1.19.3 |
Gene ID: HRGMv2_0080_11_21
Type: CAZyme
Location: 22297 - 23133 (-)
Type: CAZyme
Location: 22297 - 23133 (-)
Gene ID: HRGMv2_0080_11_22
Type: pfam
Location: 23431 - 25140 (+)
Type: pfam
Location: 23431 - 25140 (+)
Gene ID: HRGMv2_0080_11_23
Type: TC
Location: 25101 - 26111 (-)
Type: TC
Location: 25101 - 26111 (-)
Gene ID: HRGMv2_0080_11_24
Type: TC
Location: 26111 - 27739 (-)
Type: TC
Location: 26111 - 27739 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.