Cluster: HRGMv2_0080_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- CGC Family ID: CGCFAM_00235
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0080_1 | HRGMv2_0080_1_48 | 59796 | 62231 | + | GT51 |
| pfam | HRGMv2_0080_1 | HRGMv2_0080_1_49 | 62443 | 62727 | + | Ribosomal_S6 |
| TC | HRGMv2_0080_1 | HRGMv2_0080_1_50 | 62749 | 63327 | + | 3.A.7.19.1 |
Gene ID: HRGMv2_0080_1_48
Type: CAZyme
Location: 59796 - 62231 (+)
Type: CAZyme
Location: 59796 - 62231 (+)
Gene ID: HRGMv2_0080_1_49
Type: pfam
Location: 62443 - 62727 (+)
Type: pfam
Location: 62443 - 62727 (+)
Gene ID: HRGMv2_0080_1_50
Type: TC
Location: 62749 - 63327 (+)
Type: TC
Location: 62749 - 63327 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.