Cluster: HRGMv2_0080_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- CGC Family ID: CGCFAM_01719
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0080_11 | HRGMv2_0080_11_2 | 481 | 2664 | + | CBM48 | GH13_9 |
| TC | HRGMv2_0080_11 | HRGMv2_0080_11_3 | 2789 | 4054 | - | 2.A.55.3.3 |
| pfam | HRGMv2_0080_11 | HRGMv2_0080_11_4 | 4231 | 4716 | - | tRNA_edit |
| TC | HRGMv2_0080_11 | HRGMv2_0080_11_5 | 5011 | 5691 | - | 2.A.77.1.1 |
Gene ID: HRGMv2_0080_11_2
Type: CAZyme
Location: 481 - 2664 (+)
Type: CAZyme
Location: 481 - 2664 (+)
Gene ID: HRGMv2_0080_11_3
Type: TC
Location: 2789 - 4054 (-)
Type: TC
Location: 2789 - 4054 (-)
Gene ID: HRGMv2_0080_11_4
Type: pfam
Location: 4231 - 4716 (-)
Type: pfam
Location: 4231 - 4716 (-)
Gene ID: HRGMv2_0080_11_5
Type: TC
Location: 5011 - 5691 (-)
Type: TC
Location: 5011 - 5691 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.