Cluster: HRGMv2_0080_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0080
- CGC Family ID: CGCFAM_01028
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0080_5 | HRGMv2_0080_5_80 | 99153 | 100127 | + | 3.A.1.1.7 |
| TC | HRGMv2_0080_5 | HRGMv2_0080_5_81 | 100142 | 101038 | + | 3.A.1.1.36 |
| STP | HRGMv2_0080_5 | HRGMv2_0080_5_82 | 101061 | 102410 | + | SBP_bac_1 |
| CAZyme | HRGMv2_0080_5 | HRGMv2_0080_5_83 | 102443 | 104068 | + | GH36 |
Gene ID: HRGMv2_0080_5_80
Type: TC
Location: 99153 - 100127 (+)
Type: TC
Location: 99153 - 100127 (+)
Gene ID: HRGMv2_0080_5_81
Type: TC
Location: 100142 - 101038 (+)
Type: TC
Location: 100142 - 101038 (+)
Gene ID: HRGMv2_0080_5_82
Type: STP
Location: 101061 - 102410 (+)
Type: STP
Location: 101061 - 102410 (+)
Gene ID: HRGMv2_0080_5_83
Type: CAZyme
Location: 102443 - 104068 (+)
Type: CAZyme
Location: 102443 - 104068 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum timonense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.