Genome Details
Selected Rep_genome_ID: C59.CMAG_1
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella intestinalis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| C59.CMAG_1 | 1,902,491 | 100% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR040871 | 1,818,384 | 99.19% | 0% | China | Asia | CGMR |
| CGMR044618 | 1,849,382 | 100% | 0% | China | Asia | CGMR |
| HRGMv2_1647 | 1,925,814 | 100% | 0% | NA | NA | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| C59.CMAG_1_CGC14 | CGCFAM_00005 | Yes | 6 | 3 | |
| C59.CMAG_1_CGC7 | CGCFAM_00008 | Yes | 13 | 7 | |
| C59.CMAG_1_CGC8 | CGCFAM_00156 | Yes | 4 | 1 | |
| C59.CMAG_1_CGC16 | CGCFAM_00289 | Yes | 5 | 1 | |
| C59.CMAG_1_CGC10 | CGCFAM_00309 | Yes | 4 | 1 | |
| C59.CMAG_1_CGC2 | CGCFAM_00575 | Yes | 6 | 3 | host glycan |
| C59.CMAG_1_CGC9 | CGCFAM_03671 | Yes | 6 | 1 | |
| C59.CMAG_1_CGC12 | CGCFAM_04184 | Yes | 9 | 2 | |
| C59.CMAG_1_CGC11 | CGCFAM_04519 | Yes | 17 | 1 | |
| C59.CMAG_1_CGC1 | CGCFAM_08029 | Yes | 6 | 1 | |
| C59.CMAG_1_CGC13 | CGCFAM_08030 | Yes | 11 | 1 | |
| C59.CMAG_1_CGC4 | CGCFAM_08031 | Yes | 3 | 1 | |
| C59.CMAG_1_CGC6 | CGCFAM_08032 | Yes | 18 | 4 |
Top CAZyme Families