Cluster: C59.CMAG_1_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: C59.CMAG_1
- CGC Family ID: CGCFAM_08030
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C59_contig_2388 | C59_contig_2388_1076 | 1257962 | 1259338 | - | GH4 |
| TC | C59_contig_2388 | C59_contig_2388_1077 | 1259556 | 1261157 | - | 4.A.1.1.13 |
| pfam | C59_contig_2388 | C59_contig_2388_1078 | 1261162 | 1262049 | - | PRD | PRD | CAT_RBD |
| TC | C59_contig_2388 | C59_contig_2388_1079 | 1262077 | 1262631 | - | 2.A.2.2.1 |
| NULL(UNKNOWN) | C59_contig_2388 | C59_contig_2388_1080 | 1263252 | 1263962 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C59_contig_2388 | C59_contig_2388_1081 | 1264044 | 1265501 | - | 9.A.40.2.1 |
| TC | C59_contig_2388 | C59_contig_2388_1082 | 1265653 | 1266477 | - | 1.C.113.1.10 |
| TF | C59_contig_2388 | C59_contig_2388_1083 | 1266619 | 1267356 | - | LytTR |
| TC | C59_contig_2388 | C59_contig_2388_1084 | 1267527 | 1269014 | - | 9.B.33.1.1 |
| peptidase | C59_contig_2388 | C59_contig_2388_1085 | 1269224 | 1270501 | - | M38.UNW |
| TC | C59_contig_2388 | C59_contig_2388_1086 | 1270745 | 1272193 | - | 2.A.3.5.1 |
Gene ID: C59_contig_2388_1076
Type: CAZyme
Location: 1257962 - 1259338 (-)
Type: CAZyme
Location: 1257962 - 1259338 (-)
Gene ID: C59_contig_2388_1077
Type: TC
Location: 1259556 - 1261157 (-)
Type: TC
Location: 1259556 - 1261157 (-)
Gene ID: C59_contig_2388_1078
Type: pfam
Location: 1261162 - 1262049 (-)
Type: pfam
Location: 1261162 - 1262049 (-)
Gene ID: C59_contig_2388_1079
Type: TC
Location: 1262077 - 1262631 (-)
Type: TC
Location: 1262077 - 1262631 (-)
Gene ID: C59_contig_2388_1080
Type:
Location: 1263252 - 1263962 (-)
Type:
Location: 1263252 - 1263962 (-)
Gene ID: C59_contig_2388_1081
Type: TC
Location: 1264044 - 1265501 (-)
Type: TC
Location: 1264044 - 1265501 (-)
Gene ID: C59_contig_2388_1082
Type: TC
Location: 1265653 - 1266477 (-)
Type: TC
Location: 1265653 - 1266477 (-)
Gene ID: C59_contig_2388_1083
Type: TF
Location: 1266619 - 1267356 (-)
Type: TF
Location: 1266619 - 1267356 (-)
Gene ID: C59_contig_2388_1084
Type: TC
Location: 1267527 - 1269014 (-)
Type: TC
Location: 1267527 - 1269014 (-)
Gene ID: C59_contig_2388_1085
Type: peptidase
Location: 1269224 - 1270501 (-)
Type: peptidase
Location: 1269224 - 1270501 (-)
Gene ID: C59_contig_2388_1086
Type: TC
Location: 1270745 - 1272193 (-)
Type: TC
Location: 1270745 - 1272193 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.