Cluster: C59.CMAG_1_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C59.CMAG_1
- CGC Family ID: CGCFAM_08029
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C59_contig_2388 | C59_contig_2388_109 | 146952 | 148085 | + | GT2 |
| sulfatase | C59_contig_2388 | C59_contig_2388_110 | 148238 | 151033 | + | S1_2 |
| pfam | C59_contig_2388 | C59_contig_2388_111 | 151116 | 151949 | - | S6PP | Hydrolase_3 |
| TC | C59_contig_2388 | C59_contig_2388_112 | 152297 | 153217 | + | 3.A.1.3.20 |
| TC | C59_contig_2388 | C59_contig_2388_113 | 153385 | 154578 | + | 3.A.1.3.17 |
| TC | C59_contig_2388 | C59_contig_2388_114 | 154582 | 155355 | + | 3.A.1.3.20 |
Gene ID: C59_contig_2388_109
Type: CAZyme
Location: 146952 - 148085 (+)
Type: CAZyme
Location: 146952 - 148085 (+)
Gene ID: C59_contig_2388_110
Type: sulfatase
Location: 148238 - 151033 (+)
Type: sulfatase
Location: 148238 - 151033 (+)
Gene ID: C59_contig_2388_111
Type: pfam
Location: 151116 - 151949 (-)
Type: pfam
Location: 151116 - 151949 (-)
Gene ID: C59_contig_2388_112
Type: TC
Location: 152297 - 153217 (+)
Type: TC
Location: 152297 - 153217 (+)
Gene ID: C59_contig_2388_113
Type: TC
Location: 153385 - 154578 (+)
Type: TC
Location: 153385 - 154578 (+)
Gene ID: C59_contig_2388_114
Type: TC
Location: 154582 - 155355 (+)
Type: TC
Location: 154582 - 155355 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C59_contig_2388_114 | vegetarian > vegan | 1.05514 | 0.00863 |