Cluster: C59.CMAG_1_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: C59.CMAG_1
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C59_contig_2388 | C59_contig_2388_525 | 614477 | 615658 | + | GT2 |
| CAZyme | C59_contig_2388 | C59_contig_2388_526 | 615670 | 616782 | + | GT2 |
| CAZyme | C59_contig_2388 | C59_contig_2388_527 | 616834 | 618042 | - | GT2 |
| pfam | C59_contig_2388 | C59_contig_2388_528 | 618115 | 620190 | - | DUF6541 |
| pfam | C59_contig_2388 | C59_contig_2388_529 | 620386 | 620721 | - | DUF2304 |
| CAZyme | C59_contig_2388 | C59_contig_2388_530 | 620723 | 621496 | - | GT2 |
| CAZyme | C59_contig_2388 | C59_contig_2388_531 | 621583 | 622560 | + | GT2 |
| CAZyme | C59_contig_2388 | C59_contig_2388_532 | 622569 | 623717 | + | GT4 |
| pfam | C59_contig_2388 | C59_contig_2388_533 | 623783 | 625216 | + | Polysacc_synt |
| CAZyme | C59_contig_2388 | C59_contig_2388_534 | 625411 | 626430 | - | GT2 |
| pfam | C59_contig_2388 | C59_contig_2388_535 | 627875 | 629056 | + | FRG |
| TC | C59_contig_2388 | C59_contig_2388_536 | 629183 | 630007 | + | 3.A.1.103.6 |
| TC | C59_contig_2388 | C59_contig_2388_537 | 630135 | 630890 | + | 3.A.1.103.1 |
Gene ID: C59_contig_2388_525
Type: CAZyme
Location: 614477 - 615658 (+)
Type: CAZyme
Location: 614477 - 615658 (+)
Gene ID: C59_contig_2388_526
Type: CAZyme
Location: 615670 - 616782 (+)
Type: CAZyme
Location: 615670 - 616782 (+)
Gene ID: C59_contig_2388_527
Type: CAZyme
Location: 616834 - 618042 (-)
Type: CAZyme
Location: 616834 - 618042 (-)
Gene ID: C59_contig_2388_528
Type: pfam
Location: 618115 - 620190 (-)
Type: pfam
Location: 618115 - 620190 (-)
Gene ID: C59_contig_2388_529
Type: pfam
Location: 620386 - 620721 (-)
Type: pfam
Location: 620386 - 620721 (-)
Gene ID: C59_contig_2388_530
Type: CAZyme
Location: 620723 - 621496 (-)
Type: CAZyme
Location: 620723 - 621496 (-)
Gene ID: C59_contig_2388_531
Type: CAZyme
Location: 621583 - 622560 (+)
Type: CAZyme
Location: 621583 - 622560 (+)
Gene ID: C59_contig_2388_532
Type: CAZyme
Location: 622569 - 623717 (+)
Type: CAZyme
Location: 622569 - 623717 (+)
Gene ID: C59_contig_2388_533
Type: pfam
Location: 623783 - 625216 (+)
Type: pfam
Location: 623783 - 625216 (+)
Gene ID: C59_contig_2388_534
Type: CAZyme
Location: 625411 - 626430 (-)
Type: CAZyme
Location: 625411 - 626430 (-)
Gene ID: C59_contig_2388_535
Type: pfam
Location: 627875 - 629056 (+)
Type: pfam
Location: 627875 - 629056 (+)
Gene ID: C59_contig_2388_536
Type: TC
Location: 629183 - 630007 (+)
Type: TC
Location: 629183 - 630007 (+)
Gene ID: C59_contig_2388_537
Type: TC
Location: 630135 - 630890 (+)
Type: TC
Location: 630135 - 630890 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.