Cluster: C59.CMAG_1_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: C59.CMAG_1
- CGC Family ID: CGCFAM_00575
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C59_contig_2388 | C59_contig_2388_120 | 161932 | 163017 | + | GH170 |
| CAZyme | C59_contig_2388 | C59_contig_2388_121 | 163114 | 164433 | + | GH4 |
| TC | C59_contig_2388 | C59_contig_2388_122 | 164614 | 164919 | + | 4.A.3.2.8 |
| TC | C59_contig_2388 | C59_contig_2388_123 | 165004 | 166446 | + | 4.A.3.2.4 |
| NULL(UNKNOWN) | C59_contig_2388 | C59_contig_2388_124 | 166572 | 166745 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C59_contig_2388 | C59_contig_2388_125 | 166750 | 168132 | + | GH1 |
Gene ID: C59_contig_2388_120
Type: CAZyme
Location: 161932 - 163017 (+)
Type: CAZyme
Location: 161932 - 163017 (+)
Gene ID: C59_contig_2388_121
Type: CAZyme
Location: 163114 - 164433 (+)
Type: CAZyme
Location: 163114 - 164433 (+)
Gene ID: C59_contig_2388_122
Type: TC
Location: 164614 - 164919 (+)
Type: TC
Location: 164614 - 164919 (+)
Gene ID: C59_contig_2388_123
Type: TC
Location: 165004 - 166446 (+)
Type: TC
Location: 165004 - 166446 (+)
Gene ID: C59_contig_2388_124
Type:
Location: 166572 - 166745 (+)
Type:
Location: 166572 - 166745 (+)
Gene ID: C59_contig_2388_125
Type: CAZyme
Location: 166750 - 168132 (+)
Type: CAZyme
Location: 166750 - 168132 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.