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Genome Details

Selected Rep_genome_ID: C134.bin_6
Total Genomes Found: 33
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola vulgatus
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
AG283_40 5,275,028 99.25% 0% NA Africa H3AfricaPhase2
C134.bin_6 4,955,583 99.25% 0% China(Inner Mongolia) Asia IMGG
CGMR025245 5,055,653 99.25% 0.19% China Asia CGMR
CGMR063003 4,547,079 99.1% 0% China Asia CGMR
GCA_021619645.1_ASM2161964v1_genomic 5,281,287 98.29% 0% NA Africa H3AfricaPhase1
GCA_021622705.1_ASM2162270v1_genomic 5,202,446 99.25% 0.13% NA Africa H3AfricaPhase1
Rep_449 4,843,234 99.2481% 0% NA NA WIS
SPMP02_bin.13 4,486,266 96.97% 0.19% Singapore Asia SPMP
SPMP08_bin.45 4,604,015 95.8% 0.4% Singapore Asia SPMP
SPMP107_bin.45 4,659,862 97.13% 1.42% Singapore Asia SPMP
SPMP11_bin.79 4,585,679 97.18% 0.56% Singapore Asia SPMP
SPMP17_bin.56 4,693,227 95.36% 1.02% Singapore Asia SPMP
SPMP22_bin.48 4,653,978 96.81% 4.59% Singapore Asia SPMP
SPMP27_bin.76 4,048,190 98.26% 1.5% Singapore Asia SPMP
SPMP32_bin.40 4,911,672 98.25% 0.19% Singapore Asia SPMP
SPMP36_bin.10 4,620,912 96.42% 3.52% Singapore Asia SPMP
SPMP37_bin.63 5,417,582 98.2% 4.7% Singapore Asia SPMP
SPMP39_bin.129 4,231,696 98.68% 0.57% Singapore Asia SPMP
SPMP42_bin.28 5,006,754 97.74% 0.19% Singapore Asia SPMP
SPMP45_bin.189 5,019,347 97.34% 3.13% Singapore Asia SPMP
SPMP46_bin.57 4,141,091 93.18% 0.82% Singapore Asia SPMP
SPMP56_bin.23 4,528,261 95.14% 3.05% Singapore Asia SPMP
SPMP57_bin.82 4,110,602 94.67% 0.75% Singapore Asia SPMP
SPMP63_bin.50 4,514,894 96.37% 0.94% Singapore Asia SPMP
SPMP67_bin.7 4,796,055 96.82% 2.08% Singapore Asia SPMP
SPMP69_bin.21 4,180,607 96.65% 3.02% Singapore Asia SPMP
SPMP75_bin.34 4,649,192 95.4% 2.87% Singapore Asia SPMP
SPMP84_bin.39 5,025,948 97.34% 3.16% Singapore Asia SPMP
SPMP87_bin.15 4,733,885 96.99% 3.73% Singapore Asia SPMP
SPMP90_bin.44 4,722,543 97.84% 4.37% Singapore Asia SPMP
SPMP92_bin.16 4,598,071 97.22% 0.38% Singapore Asia SPMP
SPMP94_bin.46 5,785,127 98.75% 2.82% Singapore Asia SPMP
SPMP95_bin.33 5,062,257 97.62% 1.13% Singapore Asia SPMP
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
C134.bin_6_CGC12 CGCFAM_00001 Yes 9 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
C134.bin_6_CGC55 CGCFAM_00001 Yes 8 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
C134.bin_6_CGC62 CGCFAM_00001 Yes 8 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
C134.bin_6_CGC66 CGCFAM_00001 Yes 8 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
C134.bin_6_CGC4 CGCFAM_00005 Yes 6 4
C134.bin_6_CGC15 CGCFAM_00015 Yes 5 2
C134.bin_6_CGC59 CGCFAM_00023 Yes 5 3
C134.bin_6_CGC39 CGCFAM_00025 Yes 9 3 pectin/alpha-glucan
C134.bin_6_CGC13 CGCFAM_00028 Yes 4 3
C134.bin_6_CGC72 CGCFAM_00040 Yes 7 4
C134.bin_6_CGC30 CGCFAM_00048 Yes 15 2
C134.bin_6_CGC70 CGCFAM_00069 Yes 3 1
C134.bin_6_CGC16 CGCFAM_00076 Yes 3 1
C134.bin_6_CGC48 CGCFAM_00108 Yes 8 4 pectin
C134.bin_6_CGC25 CGCFAM_00109 Yes 9 5 host glycan
C134.bin_6_CGC57 CGCFAM_00110 Yes 9 3 pectin/host glycan
C134.bin_6_CGC50 CGCFAM_00151 Yes 4 3
C134.bin_6_CGC61 CGCFAM_00158 Yes 10 2
C134.bin_6_CGC71 CGCFAM_00194 Yes 22 10 host glycan
PUL0091_C134.bin_6_C0 CGCFAM_00194 Yes 7 6 host glycan
PUL0092_C134.bin_6_C2 CGCFAM_00194 Yes 9 4 host glycan
PUL0721_C134.bin_6_C0 CGCFAM_00194 Yes 12 8 host glycan
C134.bin_6_CGC58 CGCFAM_00217 Yes 21 10
C134.bin_6_CGC18 CGCFAM_00229 Yes 6 1
C134.bin_6_CGC52 CGCFAM_00296 Yes 8 4
Top CAZyme Families