Cluster: C134.bin_6_CGC25
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_00109
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_1586 | 1764295 | 1766328 | - | GH182 |
| CAZyme | C134_contig_431 | C134_contig_431_1587 | 1766348 | 1767349 | - | GH43_3 |
| CAZyme | C134_contig_431 | C134_contig_431_1588 | 1767346 | 1768302 | - | GH43_31 |
| CAZyme | C134_contig_431 | C134_contig_431_1589 | 1768323 | 1770956 | - | GH43_31 |
| pfam | C134_contig_431 | C134_contig_431_1590 | 1771036 | 1772625 | - | SusD_RagB | SusD-like_3 |
| TC | C134_contig_431 | C134_contig_431_1591 | 1772647 | 1775646 | - | 1.B.14.6.1 |
| TF | C134_contig_431 | C134_contig_431_1592 | 1775962 | 1779912 | - | HTH_AraC |
| sulfatase | C134_contig_431 | C134_contig_431_1593 | 1780095 | 1781228 | - | S1_22 |
| CAZyme | C134_contig_431 | C134_contig_431_1594 | 1781234 | 1783048 | - | GH2 |
Gene ID: C134_contig_431_1586
Type: CAZyme
Location: 1764295 - 1766328 (-)
Type: CAZyme
Location: 1764295 - 1766328 (-)
Gene ID: C134_contig_431_1587
Type: CAZyme
Location: 1766348 - 1767349 (-)
Type: CAZyme
Location: 1766348 - 1767349 (-)
Gene ID: C134_contig_431_1588
Type: CAZyme
Location: 1767346 - 1768302 (-)
Type: CAZyme
Location: 1767346 - 1768302 (-)
Gene ID: C134_contig_431_1589
Type: CAZyme
Location: 1768323 - 1770956 (-)
Type: CAZyme
Location: 1768323 - 1770956 (-)
Gene ID: C134_contig_431_1590
Type: pfam
Location: 1771036 - 1772625 (-)
Type: pfam
Location: 1771036 - 1772625 (-)
Gene ID: C134_contig_431_1591
Type: TC
Location: 1772647 - 1775646 (-)
Type: TC
Location: 1772647 - 1775646 (-)
Gene ID: C134_contig_431_1592
Type: TF
Location: 1775962 - 1779912 (-)
Type: TF
Location: 1775962 - 1779912 (-)
Gene ID: C134_contig_431_1593
Type: sulfatase
Location: 1780095 - 1781228 (-)
Type: sulfatase
Location: 1780095 - 1781228 (-)
Gene ID: C134_contig_431_1594
Type: CAZyme
Location: 1781234 - 1783048 (-)
Type: CAZyme
Location: 1781234 - 1783048 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C134_contig_431_1586 | vegan > omnivore | 1.17734 | 0.00932 |
| C134_contig_431_1587 | vegan > omnivore | 1.16642 | 0.00566 |
| C134_contig_431_1588 | vegan > omnivore | 1.20491 | 0.00932 |
| C134_contig_431_1589 | vegan > omnivore | 1.03033 | 0.01097 |
| C134_contig_431_1590 | vegan > omnivore | 1.10671 | 0.00879 |