Cluster: C134.bin_6_CGC71
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 10
- Substrate: host glycan
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_00194
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C134_contig_431 | C134_contig_431_3545 | 4330739 | 4332391 | + | 3.A.1.106.15 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_3546 | 4332375 | 4333289 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_3547 | 4333258 | 4333725 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C134_contig_431 | C134_contig_431_3548 | 4333753 | 4334913 | - | GH171 |
| STP | C134_contig_431 | C134_contig_431_3549 | 4334967 | 4335503 | + | HD |
| TC | C134_contig_431 | C134_contig_431_3550 | 4335594 | 4338329 | + | 1.B.42.1.8 |
| pfam | C134_contig_431 | C134_contig_431_3551 | 4338406 | 4339068 | - | UDG |
| pfam | C134_contig_431 | C134_contig_431_3552 | 4339186 | 4340226 | - | AsnA |
| TC | C134_contig_431 | C134_contig_431_3553 | 4340863 | 4344087 | + | 1.B.14.6.1 |
| TC | C134_contig_431 | C134_contig_431_3554 | 4344107 | 4345609 | + | 8.A.46.1.4 |
| CAZyme | C134_contig_431 | C134_contig_431_3555 | 4345742 | 4347382 | + | CBM93 | GH33 |
| CAZyme | C134_contig_431 | C134_contig_431_3556 | 4347386 | 4349392 | + | GH20 |
| sulfatase | C134_contig_431 | C134_contig_431_3557 | 4349394 | 4350059 | + | S1_16 |
| sulfatase | C134_contig_431 | C134_contig_431_3558 | 4350056 | 4351003 | + | S1_14 |
| CAZyme | C134_contig_431 | C134_contig_431_3559 | 4350988 | 4352118 | + | CE20 |
| CAZyme | C134_contig_431 | C134_contig_431_3560 | 4352145 | 4354712 | + | GH2 |
| CAZyme | C134_contig_431 | C134_contig_431_3561 | 4354729 | 4357053 | + | GH20 |
| pfam | C134_contig_431 | C134_contig_431_3562 | 4357144 | 4358367 | + | Kelch_1 | Kelch_2 | Kelch_HCF | NANM | NANM |
| CAZyme | C134_contig_431 | C134_contig_431_3563 | 4358364 | 4360418 | + | GH20 |
| CAZyme | C134_contig_431 | C134_contig_431_3564 | 4360445 | 4362697 | + | GH92 |
| CAZyme | C134_contig_431 | C134_contig_431_3565 | 4362700 | 4365204 | + | GH2 |
| CAZyme | C134_contig_431 | C134_contig_431_3566 | 4365379 | 4366542 | + | CE9 |
Gene ID: C134_contig_431_3545
Type: TC
Location: 4330739 - 4332391 (+)
Type: TC
Location: 4330739 - 4332391 (+)
Gene ID: C134_contig_431_3546
Type:
Location: 4332375 - 4333289 (+)
Type:
Location: 4332375 - 4333289 (+)
Gene ID: C134_contig_431_3547
Type:
Location: 4333258 - 4333725 (+)
Type:
Location: 4333258 - 4333725 (+)
Gene ID: C134_contig_431_3548
Type: CAZyme
Location: 4333753 - 4334913 (-)
Type: CAZyme
Location: 4333753 - 4334913 (-)
Gene ID: C134_contig_431_3549
Type: STP
Location: 4334967 - 4335503 (+)
Type: STP
Location: 4334967 - 4335503 (+)
Gene ID: C134_contig_431_3550
Type: TC
Location: 4335594 - 4338329 (+)
Type: TC
Location: 4335594 - 4338329 (+)
Gene ID: C134_contig_431_3551
Type: pfam
Location: 4338406 - 4339068 (-)
Type: pfam
Location: 4338406 - 4339068 (-)
Gene ID: C134_contig_431_3552
Type: pfam
Location: 4339186 - 4340226 (-)
Type: pfam
Location: 4339186 - 4340226 (-)
Gene ID: C134_contig_431_3553
Type: TC
Location: 4340863 - 4344087 (+)
Type: TC
Location: 4340863 - 4344087 (+)
Gene ID: C134_contig_431_3554
Type: TC
Location: 4344107 - 4345609 (+)
Type: TC
Location: 4344107 - 4345609 (+)
Gene ID: C134_contig_431_3555
Type: CAZyme
Location: 4345742 - 4347382 (+)
Type: CAZyme
Location: 4345742 - 4347382 (+)
Gene ID: C134_contig_431_3556
Type: CAZyme
Location: 4347386 - 4349392 (+)
Type: CAZyme
Location: 4347386 - 4349392 (+)
Gene ID: C134_contig_431_3557
Type: sulfatase
Location: 4349394 - 4350059 (+)
Type: sulfatase
Location: 4349394 - 4350059 (+)
Gene ID: C134_contig_431_3558
Type: sulfatase
Location: 4350056 - 4351003 (+)
Type: sulfatase
Location: 4350056 - 4351003 (+)
Gene ID: C134_contig_431_3559
Type: CAZyme
Location: 4350988 - 4352118 (+)
Type: CAZyme
Location: 4350988 - 4352118 (+)
Gene ID: C134_contig_431_3560
Type: CAZyme
Location: 4352145 - 4354712 (+)
Type: CAZyme
Location: 4352145 - 4354712 (+)
Gene ID: C134_contig_431_3561
Type: CAZyme
Location: 4354729 - 4357053 (+)
Type: CAZyme
Location: 4354729 - 4357053 (+)
Gene ID: C134_contig_431_3562
Type: pfam
Location: 4357144 - 4358367 (+)
Type: pfam
Location: 4357144 - 4358367 (+)
Gene ID: C134_contig_431_3563
Type: CAZyme
Location: 4358364 - 4360418 (+)
Type: CAZyme
Location: 4358364 - 4360418 (+)
Gene ID: C134_contig_431_3564
Type: CAZyme
Location: 4360445 - 4362697 (+)
Type: CAZyme
Location: 4360445 - 4362697 (+)
Gene ID: C134_contig_431_3565
Type: CAZyme
Location: 4362700 - 4365204 (+)
Type: CAZyme
Location: 4362700 - 4365204 (+)
Gene ID: C134_contig_431_3566
Type: CAZyme
Location: 4365379 - 4366542 (+)
Type: CAZyme
Location: 4365379 - 4366542 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.