Cluster: C134.bin_6_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_722 | 791666 | 793348 | - | PL1_2 |
| pfam | C134_contig_431 | C134_contig_431_723 | 793548 | 794180 | - | DUF3826 |
| CAZyme | C134_contig_431 | C134_contig_431_724 | 794241 | 795974 | - | PL1_2 |
| pfam | C134_contig_431 | C134_contig_431_725 | 796143 | 798152 | - | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_726 | 798173 | 799891 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C134_contig_431 | C134_contig_431_727 | 799916 | 801628 | - | 1.B.14.6.1 |
| pfam | C134_contig_431 | C134_contig_431_728 | 801658 | 802542 | - | AP_endonuc_2 |
| TF | C134_contig_431 | C134_contig_431_729 | 802708 | 807111 | - | HTH_AraC |
| CAZyme | C134_contig_431 | C134_contig_431_730 | 807237 | 809861 | - | GH2 |
Gene ID: C134_contig_431_722
Type: CAZyme
Location: 791666 - 793348 (-)
Type: CAZyme
Location: 791666 - 793348 (-)
Gene ID: C134_contig_431_723
Type: pfam
Location: 793548 - 794180 (-)
Type: pfam
Location: 793548 - 794180 (-)
Gene ID: C134_contig_431_724
Type: CAZyme
Location: 794241 - 795974 (-)
Type: CAZyme
Location: 794241 - 795974 (-)
Gene ID: C134_contig_431_725
Type: pfam
Location: 796143 - 798152 (-)
Type: pfam
Location: 796143 - 798152 (-)
Gene ID: C134_contig_431_726
Type:
Location: 798173 - 799891 (-)
Type:
Location: 798173 - 799891 (-)
Gene ID: C134_contig_431_727
Type: TC
Location: 799916 - 801628 (-)
Type: TC
Location: 799916 - 801628 (-)
Gene ID: C134_contig_431_728
Type: pfam
Location: 801658 - 802542 (-)
Type: pfam
Location: 801658 - 802542 (-)
Gene ID: C134_contig_431_729
Type: TF
Location: 802708 - 807111 (-)
Type: TF
Location: 802708 - 807111 (-)
Gene ID: C134_contig_431_730
Type: CAZyme
Location: 807237 - 809861 (-)
Type: CAZyme
Location: 807237 - 809861 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.