Cluster: C134.bin_6_CGC58
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 10
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_00217
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_3025 | 3606446 | 3607684 | + | PL42 |
| CAZyme | C134_contig_431 | C134_contig_431_3026 | 3607776 | 3610091 | + | GH105 | GH154 |
| pfam | C134_contig_431 | C134_contig_431_3027 | 3610233 | 3611273 | + | DUF3810 |
| TF | C134_contig_431 | C134_contig_431_3028 | 3611491 | 3615525 | - | HTH_AraC |
| TC | C134_contig_431 | C134_contig_431_3029 | 3615844 | 3619152 | + | 1.B.14.6.1 |
| pfam | C134_contig_431 | C134_contig_431_3030 | 3619168 | 3621192 | + | SusD_RagB | SusD-like_3 |
| TC | C134_contig_431 | C134_contig_431_3031 | 3621596 | 3624697 | + | 1.B.14.6.1 |
| TC | C134_contig_431 | C134_contig_431_3032 | 3624711 | 3626402 | + | 8.A.46.1.6 |
| CAZyme | C134_contig_431 | C134_contig_431_3033 | 3626687 | 3629143 | + | CBM91 | GH43_19 | GH43_9 |
| CAZyme | C134_contig_431 | C134_contig_431_3034 | 3629168 | 3630310 | + | GH43_24 |
| CAZyme | C134_contig_431 | C134_contig_431_3035 | 3630635 | 3631636 | + | GH43_17 |
| pfam | C134_contig_431 | C134_contig_431_3036 | 3631756 | 3633309 | - | SusD_RagB | SusD-like_3 |
| TC | C134_contig_431 | C134_contig_431_3037 | 3633322 | 3636393 | - | 1.B.14.6.1 |
| CAZyme | C134_contig_431 | C134_contig_431_3038 | 3636975 | 3638921 | + | GH43_19 | GH43_34 |
| CAZyme | C134_contig_431 | C134_contig_431_3039 | 3638949 | 3641447 | + | GH51_2 |
| CAZyme | C134_contig_431 | C134_contig_431_3040 | 3641464 | 3643812 | + | GH35 |
| TF | C134_contig_431 | C134_contig_431_3041 | 3644000 | 3646840 | + | HTH_AraC | HTH_AraC |
| TC | C134_contig_431 | C134_contig_431_3042 | 3647052 | 3650000 | + | 1.B.14.6.1 |
| TC | C134_contig_431 | C134_contig_431_3043 | 3650022 | 3651656 | + | 8.A.46.1.1 |
| CAZyme | C134_contig_431 | C134_contig_431_3044 | 3651726 | 3654185 | + | GH31_4 |
| CAZyme | C134_contig_431 | C134_contig_431_3045 | 3654239 | 3656590 | + | GH146 |
Gene ID: C134_contig_431_3025
Type: CAZyme
Location: 3606446 - 3607684 (+)
Type: CAZyme
Location: 3606446 - 3607684 (+)
Gene ID: C134_contig_431_3026
Type: CAZyme
Location: 3607776 - 3610091 (+)
Type: CAZyme
Location: 3607776 - 3610091 (+)
Gene ID: C134_contig_431_3027
Type: pfam
Location: 3610233 - 3611273 (+)
Type: pfam
Location: 3610233 - 3611273 (+)
Gene ID: C134_contig_431_3028
Type: TF
Location: 3611491 - 3615525 (-)
Type: TF
Location: 3611491 - 3615525 (-)
Gene ID: C134_contig_431_3029
Type: TC
Location: 3615844 - 3619152 (+)
Type: TC
Location: 3615844 - 3619152 (+)
Gene ID: C134_contig_431_3030
Type: pfam
Location: 3619168 - 3621192 (+)
Type: pfam
Location: 3619168 - 3621192 (+)
Gene ID: C134_contig_431_3031
Type: TC
Location: 3621596 - 3624697 (+)
Type: TC
Location: 3621596 - 3624697 (+)
Gene ID: C134_contig_431_3032
Type: TC
Location: 3624711 - 3626402 (+)
Type: TC
Location: 3624711 - 3626402 (+)
Gene ID: C134_contig_431_3033
Type: CAZyme
Location: 3626687 - 3629143 (+)
Type: CAZyme
Location: 3626687 - 3629143 (+)
Gene ID: C134_contig_431_3034
Type: CAZyme
Location: 3629168 - 3630310 (+)
Type: CAZyme
Location: 3629168 - 3630310 (+)
Gene ID: C134_contig_431_3035
Type: CAZyme
Location: 3630635 - 3631636 (+)
Type: CAZyme
Location: 3630635 - 3631636 (+)
Gene ID: C134_contig_431_3036
Type: pfam
Location: 3631756 - 3633309 (-)
Type: pfam
Location: 3631756 - 3633309 (-)
Gene ID: C134_contig_431_3037
Type: TC
Location: 3633322 - 3636393 (-)
Type: TC
Location: 3633322 - 3636393 (-)
Gene ID: C134_contig_431_3038
Type: CAZyme
Location: 3636975 - 3638921 (+)
Type: CAZyme
Location: 3636975 - 3638921 (+)
Gene ID: C134_contig_431_3039
Type: CAZyme
Location: 3638949 - 3641447 (+)
Type: CAZyme
Location: 3638949 - 3641447 (+)
Gene ID: C134_contig_431_3040
Type: CAZyme
Location: 3641464 - 3643812 (+)
Type: CAZyme
Location: 3641464 - 3643812 (+)
Gene ID: C134_contig_431_3041
Type: TF
Location: 3644000 - 3646840 (+)
Type: TF
Location: 3644000 - 3646840 (+)
Gene ID: C134_contig_431_3042
Type: TC
Location: 3647052 - 3650000 (+)
Type: TC
Location: 3647052 - 3650000 (+)
Gene ID: C134_contig_431_3043
Type: TC
Location: 3650022 - 3651656 (+)
Type: TC
Location: 3650022 - 3651656 (+)
Gene ID: C134_contig_431_3044
Type: CAZyme
Location: 3651726 - 3654185 (+)
Type: CAZyme
Location: 3651726 - 3654185 (+)
Gene ID: C134_contig_431_3045
Type: CAZyme
Location: 3654239 - 3656590 (+)
Type: CAZyme
Location: 3654239 - 3656590 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.