Cluster: C134.bin_6_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_00005
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C134_contig_431 | C134_contig_431_170 | 197455 | 198822 | + | 2.A.66.10.1 |
| CAZyme | C134_contig_431 | C134_contig_431_171 | 198836 | 199651 | + | GT2 |
| CAZyme | C134_contig_431 | C134_contig_431_172 | 199659 | 200450 | + | GT11 |
| pfam | C134_contig_431 | C134_contig_431_173 | 200462 | 201721 | + | Wzy_C |
| CAZyme | C134_contig_431 | C134_contig_431_174 | 201721 | 202596 | + | GT2 |
| CAZyme | C134_contig_431 | C134_contig_431_175 | 202596 | 203705 | + | GT4 |
Gene ID: C134_contig_431_170
Type: TC
Location: 197455 - 198822 (+)
Type: TC
Location: 197455 - 198822 (+)
Gene ID: C134_contig_431_171
Type: CAZyme
Location: 198836 - 199651 (+)
Type: CAZyme
Location: 198836 - 199651 (+)
Gene ID: C134_contig_431_172
Type: CAZyme
Location: 199659 - 200450 (+)
Type: CAZyme
Location: 199659 - 200450 (+)
Gene ID: C134_contig_431_173
Type: pfam
Location: 200462 - 201721 (+)
Type: pfam
Location: 200462 - 201721 (+)
Gene ID: C134_contig_431_174
Type: CAZyme
Location: 201721 - 202596 (+)
Type: CAZyme
Location: 201721 - 202596 (+)
Gene ID: C134_contig_431_175
Type: CAZyme
Location: 202596 - 203705 (+)
Type: CAZyme
Location: 202596 - 203705 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.