Cluster: C134.bin_6_CGC30
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_00048
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C134_contig_431 | C134_contig_431_1819 | 2070642 | 2071982 | + | 1.A.26.1.2 |
| pfam | C134_contig_431 | C134_contig_431_1820 | 2072243 | 2074051 | + | DUF349 | DUF349 | DUF349 | DUF349 | DUF349 |
| pfam | C134_contig_431 | C134_contig_431_1821 | 2074597 | 2074956 | + | RsfS |
| TC | C134_contig_431 | C134_contig_431_1822 | 2075010 | 2076980 | + | 3.A.16.1.1 |
| pfam | C134_contig_431 | C134_contig_431_1823 | 2077139 | 2077978 | + | CTP_transf_1 |
| pfam | C134_contig_431 | C134_contig_431_1824 | 2077970 | 2078704 | - | NigD_N | NigD_C |
| CAZyme | C134_contig_431 | C134_contig_431_1825 | 2078761 | 2079900 | - | GT19 |
| pfam | C134_contig_431 | C134_contig_431_1826 | 2079897 | 2080670 | - | SurE |
| TC | C134_contig_431 | C134_contig_431_1827 | 2080928 | 2081695 | + | 8.A.3.2.3 |
| pfam | C134_contig_431 | C134_contig_431_1828 | 2081699 | 2082595 | + | ParBc | HTH_ParB | ParB_dimer |
| pfam | C134_contig_431 | C134_contig_431_1829 | 2082665 | 2083372 | + | DUF5683 |
| CAZyme | C134_contig_431 | C134_contig_431_1830 | 2083377 | 2084639 | + | GH23 |
| STP | C134_contig_431 | C134_contig_431_1831 | 2084741 | 2087011 | + | HD |
| TF | C134_contig_431 | C134_contig_431_1832 | 2087103 | 2087450 | - | MerR |
| TC | C134_contig_431 | C134_contig_431_1833 | 2087484 | 2088452 | - | 1.A.34.1.3 |
Gene ID: C134_contig_431_1819
Type: TC
Location: 2070642 - 2071982 (+)
Type: TC
Location: 2070642 - 2071982 (+)
Gene ID: C134_contig_431_1820
Type: pfam
Location: 2072243 - 2074051 (+)
Type: pfam
Location: 2072243 - 2074051 (+)
Gene ID: C134_contig_431_1821
Type: pfam
Location: 2074597 - 2074956 (+)
Type: pfam
Location: 2074597 - 2074956 (+)
Gene ID: C134_contig_431_1822
Type: TC
Location: 2075010 - 2076980 (+)
Type: TC
Location: 2075010 - 2076980 (+)
Gene ID: C134_contig_431_1823
Type: pfam
Location: 2077139 - 2077978 (+)
Type: pfam
Location: 2077139 - 2077978 (+)
Gene ID: C134_contig_431_1824
Type: pfam
Location: 2077970 - 2078704 (-)
Type: pfam
Location: 2077970 - 2078704 (-)
Gene ID: C134_contig_431_1825
Type: CAZyme
Location: 2078761 - 2079900 (-)
Type: CAZyme
Location: 2078761 - 2079900 (-)
Gene ID: C134_contig_431_1826
Type: pfam
Location: 2079897 - 2080670 (-)
Type: pfam
Location: 2079897 - 2080670 (-)
Gene ID: C134_contig_431_1827
Type: TC
Location: 2080928 - 2081695 (+)
Type: TC
Location: 2080928 - 2081695 (+)
Gene ID: C134_contig_431_1828
Type: pfam
Location: 2081699 - 2082595 (+)
Type: pfam
Location: 2081699 - 2082595 (+)
Gene ID: C134_contig_431_1829
Type: pfam
Location: 2082665 - 2083372 (+)
Type: pfam
Location: 2082665 - 2083372 (+)
Gene ID: C134_contig_431_1830
Type: CAZyme
Location: 2083377 - 2084639 (+)
Type: CAZyme
Location: 2083377 - 2084639 (+)
Gene ID: C134_contig_431_1831
Type: STP
Location: 2084741 - 2087011 (+)
Type: STP
Location: 2084741 - 2087011 (+)
Gene ID: C134_contig_431_1832
Type: TF
Location: 2087103 - 2087450 (-)
Type: TF
Location: 2087103 - 2087450 (-)
Gene ID: C134_contig_431_1833
Type: TC
Location: 2087484 - 2088452 (-)
Type: TC
Location: 2087484 - 2088452 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.