Cluster: C134.bin_6_CGC39
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate: pectin/alpha-glucan
- Genome ID: C134.bin_6
- CGC Family ID: CGCFAM_00025
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C134_contig_431 | C134_contig_431_2270 | 2629582 | 2631432 | + | GH13_46 |
| CAZyme | C134_contig_431 | C134_contig_431_2271 | 2631474 | 2633690 | + | GH97 |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_2272 | 2633743 | 2633922 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C134_contig_431 | C134_contig_431_2273 | 2634090 | 2637119 | + | 1.B.14.6.1 |
| TC | C134_contig_431 | C134_contig_431_2274 | 2637132 | 2638826 | + | 8.A.46.1.1 |
| pfam | C134_contig_431 | C134_contig_431_2275 | 2638855 | 2639991 | + | SusE | SusF_SusE |
| NULL(UNKNOWN) | C134_contig_431 | C134_contig_431_2276 | 2640015 | 2641430 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C134_contig_431 | C134_contig_431_2277 | 2641520 | 2644099 | + | GH13_10 |
| TC | C134_contig_431 | C134_contig_431_2278 | 2644270 | 2645250 | - | 1.B.57.4.3 |
Gene ID: C134_contig_431_2270
Type: CAZyme
Location: 2629582 - 2631432 (+)
Type: CAZyme
Location: 2629582 - 2631432 (+)
Gene ID: C134_contig_431_2271
Type: CAZyme
Location: 2631474 - 2633690 (+)
Type: CAZyme
Location: 2631474 - 2633690 (+)
Gene ID: C134_contig_431_2272
Type:
Location: 2633743 - 2633922 (+)
Type:
Location: 2633743 - 2633922 (+)
Gene ID: C134_contig_431_2273
Type: TC
Location: 2634090 - 2637119 (+)
Type: TC
Location: 2634090 - 2637119 (+)
Gene ID: C134_contig_431_2274
Type: TC
Location: 2637132 - 2638826 (+)
Type: TC
Location: 2637132 - 2638826 (+)
Gene ID: C134_contig_431_2275
Type: pfam
Location: 2638855 - 2639991 (+)
Type: pfam
Location: 2638855 - 2639991 (+)
Gene ID: C134_contig_431_2276
Type:
Location: 2640015 - 2641430 (+)
Type:
Location: 2640015 - 2641430 (+)
Gene ID: C134_contig_431_2277
Type: CAZyme
Location: 2641520 - 2644099 (+)
Type: CAZyme
Location: 2641520 - 2644099 (+)
Gene ID: C134_contig_431_2278
Type: TC
Location: 2644270 - 2645250 (-)
Type: TC
Location: 2644270 - 2645250 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola vulgatus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.