y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.012G173600.1 |
Family | GH5 |
Protein Properties | Length: 580 Molecular Weight: 64778.3 Isoelectric Point: 6.5043 |
Chromosome | Chromosome/Scaffold: 12 Start: 34324845 End: 34333432 |
Description | Cellulase (glycosyl hydrolase family 5) protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 32 | 344 | 5.74532e-44 |
IVDDQTDRRVKLACVNWPSHLEPVFAEGLSKRSMDSIAEQIVSMGFNCVRLTWPLYLVTNDSLSSLTVRRSFQNLGLMEPIAGIQANNPSVIDVSLIQAF QAVVSSLGKNNVMVILDNHLSKPGWCCGYFDGDGFFSDPYFNPDLWVTGLTRMATLFNGVTNVVGMSLRNELRGPKQNIDDWYRYMQKGAEAVHAANPNV LIILSGLSFDKDLSFIKNRPLILTFSRKLVFEMHWYGFSDGQAWVTGNPNRVCGRVTNDMKRMSGFLVDKGYPLFVSEFGVDLRGTNVNDNRYLNCFLGM VAELDLDWALWTL |
Full Sequence |
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Protein Sequence Length: 580 Download |
MARLAILLLI LIAVDHVNPT TSLPLSTNSR WIVDDQTDRR VKLACVNWPS HLEPVFAEGL 60 SKRSMDSIAE QIVSMGFNCV RLTWPLYLVT NDSLSSLTVR RSFQNLGLME PIAGIQANNP 120 SVIDVSLIQA FQAVVSSLGK NNVMVILDNH LSKPGWCCGY FDGDGFFSDP YFNPDLWVTG 180 LTRMATLFNG VTNVVGMSLR NELRGPKQNI DDWYRYMQKG AEAVHAANPN VLIILSGLSF 240 DKDLSFIKNR PLILTFSRKL VFEMHWYGFS DGQAWVTGNP NRVCGRVTND MKRMSGFLVD 300 KGYPLFVSEF GVDLRGTNVN DNRYLNCFLG MVAELDLDWA LWTLVGSYYL REGVIGFNEY 360 YGILDWNWID MRNSSFVERI SALQSPFRGL GLLETELHKV IFHPLTGLCV LRKPSGSSLS 420 LGPCTDSEAW NYSPQKTLEL KGTQLCLQAD EPGTMVKLGT ICGGSNSRWE TISDSKMHLS 480 LKLGNVTSVC MDIDSNNDIV VAGCKCLNDD SQCDPKSQWF KLVNSTRSGN GGNSFVDFDS 540 ITDFGKRVFM ESFGWFDIKI SLDRFRASLA LLLRLKGTF* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00458 | RICIN | 3.0e-5 | 401 | 512 | 120 | + Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication. | ||
cd00161 | RICIN | 3.0e-5 | 399 | 519 | 133 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
pfam00150 | Cellulase | 3.0e-16 | 62 | 344 | 292 | + Cellulase (glycosyl hydrolase family 5). |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172772.2 | 0 | 19 | 527 | 29 | 537 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | XP_002285424.1 | 0 | 9 | 526 | 13 | 529 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312657.1 | 0 | 11 | 553 | 1 | 540 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315653.1 | 0 | 22 | 528 | 2 | 507 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515055.1 | 0 | 21 | 553 | 30 | 562 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1vrx_B | 0.00000000000003 | 35 | 382 | 15 | 352 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
PDB | 1vrx_A | 0.00000000000003 | 35 | 382 | 15 | 352 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
PDB | 1ece_B | 0.0000000000003 | 35 | 382 | 15 | 352 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
PDB | 1ece_A | 0.0000000000003 | 35 | 382 | 15 | 352 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
PDB | 4dm1_C | 0.000004 | 41 | 268 | 28 | 267 | A Chain A, Contribution Of Disulfide Bond Toward Thermostability In Hyperthermostable Endocellulase |