y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra026436 |
Family | GH5 |
Protein Properties | Length: 524 Molecular Weight: 58654.6 Isoelectric Point: 7.7712 |
Chromosome | Chromosome/Scaffold: 01 Start: 9312553 End: 9315001 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 33 | 348 | 1.3999e-42 |
IVDEKGQRVKLACVNWPAHLQPAVAEGLSKQPLDSISKKIVSMGFNCVRLTWPLDLMTNDTLARKITVKQSFESLNLFDDALGIQIHNPKILNLPIFNAF QEVVSNLGQNGLMVILDNHLTYPGWCCSDNDLDAFFGYPNFDPVIWAKGLGKMATLFRNVTNVIGMSLRNEPRGTRDYPDLWFRFMPKGAEAVHAANPEV LVILSGIDFDTNLSFLRDRFFNVSFTDKLVFEQHWYSFSHEGGAWVKHNSNDICAKIIGEVNHNGGFLLDRGFPLILSEFGTDERGVDVSGNRYMNCLVA WAAEKDLDWAVWALTG |
Full Sequence |
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Protein Sequence Length: 524 Download |
MARSICLCIF LLFITWIPIL STSFPLSTKT RWIVDEKGQR VKLACVNWPA HLQPAVAEGL 60 SKQPLDSISK KIVSMGFNCV RLTWPLDLMT NDTLARKITV KQSFESLNLF DDALGIQIHN 120 PKILNLPIFN AFQEVVSNLG QNGLMVILDN HLTYPGWCCS DNDLDAFFGY PNFDPVIWAK 180 GLGKMATLFR NVTNVIGMSL RNEPRGTRDY PDLWFRFMPK GAEAVHAANP EVLVILSGID 240 FDTNLSFLRD RFFNVSFTDK LVFEQHWYSF SHEGGAWVKH NSNDICAKII GEVNHNGGFL 300 LDRGFPLILS EFGTDERGVD VSGNRYMNCL VAWAAEKDLD WAVWALTGDY YLRTGTKHMV 360 ETYGVLDATW KNVRNSTYLQ KLSGIQHPFR GPGLQEKKII LHPHTGLCVT NNHSGNVPTL 420 RLELCTKSEP STFNPKEGIL WINKMCVETP DVAGQKVKLG VGTKCSKLGQ ISATKMHLSF 480 KTSNGLLLCL DVDERDNSIV ANPCKCLTKD ASCDPASQWF KVL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG2730 | BglC | 1.0e-5 | 40 | 214 | 179 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
pfam00150 | Cellulase | 2.0e-17 | 62 | 349 | 296 | + Cellulase (glycosyl hydrolase family 5). |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD31066.1 | 0 | 23 | 523 | 2 | 503 | AC007357_15 F3F19.15 [Arabidopsis thaliana] |
RefSeq | NP_172772.2 | 0 | 23 | 523 | 32 | 533 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | NP_197172.1 | 0 | 1 | 523 | 1 | 488 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | NP_197252.1 | 0 | 24 | 523 | 26 | 526 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
RefSeq | XP_002315653.1 | 0 | 23 | 523 | 2 | 502 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ece_B | 0.000000000004 | 28 | 314 | 8 | 285 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
PDB | 1ece_A | 0.000000000004 | 28 | 314 | 8 | 285 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
PDB | 1vrx_B | 0.000000000004 | 28 | 314 | 8 | 285 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
PDB | 1vrx_A | 0.000000000004 | 28 | 314 | 8 | 285 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
PDB | 2zun_C | 0.00003 | 5 | 378 | 12 | 402 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |