Genome Details
Selected Rep_genome_ID: Rep_604
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes merdipullorum
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR006129 | 2,474,803 | 98.33% | 0.96% | China | Asia | CGMR |
| DM127_58 | 2,616,617 | 97.12% | 0.48% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_0306 | 2,426,525 | 97.59% | 0.48% | China | Asia | HRGM |
| MGYG000000414 | 2,648,727 | 99.04% | 0.96% | Sweden | Europe | UHGG |
| Rep_604 | 2,642,737 | 98.2853% | 0.480769% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_604_CGC36 | CGCFAM_00113 | Yes | 4 | 2 | |
| Rep_604_CGC20 | CGCFAM_00147 | Yes | 3 | 1 | |
| Rep_604_CGC23 | CGCFAM_00511 | Yes | 7 | 1 | |
| Rep_604_CGC7 | CGCFAM_00519 | Yes | 4 | 2 | |
| Rep_604_CGC42 | CGCFAM_02092 | Yes | 3 | 1 | |
| Rep_604_CGC43 | CGCFAM_02407 | Yes | 9 | 2 | |
| Rep_604_CGC24 | CGCFAM_02408 | Yes | 12 | 2 | |
| Rep_604_CGC35 | CGCFAM_03093 | Yes | 7 | 2 | |
| Rep_604_CGC32 | CGCFAM_03795 | Yes | 3 | 2 | |
| Rep_604_CGC25 | CGCFAM_04386 | Yes | 8 | 3 | |
| Rep_604_CGC27 | CGCFAM_04387 | Yes | 4 | 1 | |
| Rep_604_CGC8 | CGCFAM_04389 | Yes | 3 | 1 | |
| Rep_604_CGC14 | CGCFAM_04391 | Yes | 7 | 1 | |
| Rep_604_CGC29 | CGCFAM_04392 | Yes | 3 | 1 | |
| Rep_604_CGC41 | CGCFAM_06240 | Yes | 6 | 1 | |
| Rep_604_CGC3 | CGCFAM_06256 | Yes | 3 | 1 | |
| Rep_604_CGC44 | CGCFAM_06732 | Yes | 6 | 3 | |
| Rep_604_CGC40 | CGCFAM_08427 | Yes | 3 | 1 | |
| Rep_604_CGC2 | CGCFAM_10508 | Yes | 8 | 3 |
Top CAZyme Families