Cluster: Rep_604_CGC24
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_604
- CGC Family ID: CGCFAM_02408
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_604_c_0 | Rep_604_c_0_1143 | 1317649 | 1318953 | - | 2.A.21.5.1 |
| TC | Rep_604_c_0 | Rep_604_c_0_1144 | 1319095 | 1320996 | + | 3.B.1.1.1 |
| peptidase | Rep_604_c_0 | Rep_604_c_0_1145 | 1321177 | 1323024 | - | S15.UNW |
| pfam | Rep_604_c_0 | Rep_604_c_0_1146 | 1323077 | 1323736 | - | Ion_trans_2 |
| CAZyme | Rep_604_c_0 | Rep_604_c_0_1147 | 1324227 | 1325333 | + | GH93 |
| peptidase | Rep_604_c_0 | Rep_604_c_0_1148 | 1325379 | 1326317 | - | G05.UPW |
| pfam | Rep_604_c_0 | Rep_604_c_0_1149 | 1326385 | 1329360 | - | PPDK_N |
| CAZyme | Rep_604_c_0 | Rep_604_c_0_1150 | 1329405 | 1330508 | - | GH43_24 |
| pfam | Rep_604_c_0 | Rep_604_c_0_1151 | 1330793 | 1331266 | + | C_GCAxxG_C_C |
| pfam | Rep_604_c_0 | Rep_604_c_0_1152 | 1331448 | 1332278 | + | GDPD |
| TC | Rep_604_c_0 | Rep_604_c_0_1153 | 1332359 | 1332850 | - | 1.A.22.1.1 |
| TC | Rep_604_c_0 | Rep_604_c_0_1154 | 1333270 | 1336467 | + | 1.B.14.6.3 |
Gene ID: Rep_604_c_0_1143
Type: TC
Location: 1317649 - 1318953 (-)
Type: TC
Location: 1317649 - 1318953 (-)
Gene ID: Rep_604_c_0_1144
Type: TC
Location: 1319095 - 1320996 (+)
Type: TC
Location: 1319095 - 1320996 (+)
Gene ID: Rep_604_c_0_1145
Type: peptidase
Location: 1321177 - 1323024 (-)
Type: peptidase
Location: 1321177 - 1323024 (-)
Gene ID: Rep_604_c_0_1146
Type: pfam
Location: 1323077 - 1323736 (-)
Type: pfam
Location: 1323077 - 1323736 (-)
Gene ID: Rep_604_c_0_1147
Type: CAZyme
Location: 1324227 - 1325333 (+)
Type: CAZyme
Location: 1324227 - 1325333 (+)
Gene ID: Rep_604_c_0_1148
Type: peptidase
Location: 1325379 - 1326317 (-)
Type: peptidase
Location: 1325379 - 1326317 (-)
Gene ID: Rep_604_c_0_1149
Type: pfam
Location: 1326385 - 1329360 (-)
Type: pfam
Location: 1326385 - 1329360 (-)
Gene ID: Rep_604_c_0_1150
Type: CAZyme
Location: 1329405 - 1330508 (-)
Type: CAZyme
Location: 1329405 - 1330508 (-)
Gene ID: Rep_604_c_0_1151
Type: pfam
Location: 1330793 - 1331266 (+)
Type: pfam
Location: 1330793 - 1331266 (+)
Gene ID: Rep_604_c_0_1152
Type: pfam
Location: 1331448 - 1332278 (+)
Type: pfam
Location: 1331448 - 1332278 (+)
Gene ID: Rep_604_c_0_1153
Type: TC
Location: 1332359 - 1332850 (-)
Type: TC
Location: 1332359 - 1332850 (-)
Gene ID: Rep_604_c_0_1154
Type: TC
Location: 1333270 - 1336467 (+)
Type: TC
Location: 1333270 - 1336467 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.