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Cluster: Rep_604_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_604_c_0 Rep_604_c_0_537 632002 633114 - GH5_36
sulfatase Rep_604_c_0 Rep_604_c_0_538 633489 635180 - S1_2
TC Rep_604_c_0 Rep_604_c_0_539 635261 636019 - 9.B.31.1.2
TC Rep_604_c_0 Rep_604_c_0_540 636289 637287 + 2.A.115.1.2
pfam Rep_604_c_0 Rep_604_c_0_541 637304 638653 + UPF0004 | TRAM | Radical_SAM
NULL(UNKNOWN) Rep_604_c_0 Rep_604_c_0_542 639718 640653 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_604_c_0 Rep_604_c_0_543 640668 642764 - 4.A.1.1.15
Gene ID: Rep_604_c_0_537
Type: CAZyme
Location: 632002 - 633114 (-)
Gene ID: Rep_604_c_0_538
Type: sulfatase
Location: 633489 - 635180 (-)
Gene ID: Rep_604_c_0_539
Type: TC
Location: 635261 - 636019 (-)
Gene ID: Rep_604_c_0_540
Type: TC
Location: 636289 - 637287 (+)
Gene ID: Rep_604_c_0_541
Type: pfam
Location: 637304 - 638653 (+)
Gene ID: Rep_604_c_0_542
Type:
Location: 639718 - 640653 (-)
Gene ID: Rep_604_c_0_543
Type: TC
Location: 640668 - 642764 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_604_c_0_542 vegetarian > omnivore 1.05365 0.02174

🧭 Explore Read Mapping of CGC

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