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Cluster: Rep_604_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_604_c_0 Rep_604_c_0_1004 1161712 1162890 + GT4
STP Rep_604_c_0 Rep_604_c_0_1005 1162972 1163430 - SIS
STP Rep_604_c_0 Rep_604_c_0_1006 1163491 1164828 - SIS
TC Rep_604_c_0 Rep_604_c_0_1007 1165071 1166423 - 2.A.1.53.5
STP Rep_604_c_0 Rep_604_c_0_1008 1166482 1168485 - TPR_1 | TPR_1 | TPR_1 | TPR_1 | TPR_1 | TPR_1
pfam Rep_604_c_0 Rep_604_c_0_1009 1168595 1169476 - GTP_EFTU | Ras | MMR_HSR1 | FeoB_N | KH_2 | PduV-EutP
TC Rep_604_c_0 Rep_604_c_0_1010 1169765 1171093 - 3.A.5.1.1
Gene ID: Rep_604_c_0_1004
Type: CAZyme
Location: 1161712 - 1162890 (+)
Gene ID: Rep_604_c_0_1005
Type: STP
Location: 1162972 - 1163430 (-)
Gene ID: Rep_604_c_0_1006
Type: STP
Location: 1163491 - 1164828 (-)
Gene ID: Rep_604_c_0_1007
Type: TC
Location: 1165071 - 1166423 (-)
Gene ID: Rep_604_c_0_1008
Type: STP
Location: 1166482 - 1168485 (-)
Gene ID: Rep_604_c_0_1009
Type: pfam
Location: 1168595 - 1169476 (-)
Gene ID: Rep_604_c_0_1010
Type: TC
Location: 1169765 - 1171093 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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