Cluster: Rep_604_CGC35
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_604
- CGC Family ID: CGCFAM_03093
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_604_c_1 | Rep_604_c_1_495 | 581578 | 582597 | + | GH43_18 |
| NULL(UNKNOWN) | Rep_604_c_1 | Rep_604_c_1_496 | 582755 | 583099 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_604_c_1 | Rep_604_c_1_497 | 583313 | 584014 | + | 3.A.1.27.2 |
| TC | Rep_604_c_1 | Rep_604_c_1_498 | 584019 | 584807 | + | 3.A.1.27.5 |
| pfam | Rep_604_c_1 | Rep_604_c_1_499 | 585397 | 586413 | + | Gp_dh_N | Gp_dh_C |
| TF | Rep_604_c_1 | Rep_604_c_1_500 | 586515 | 587609 | - | GntR |
| CAZyme | Rep_604_c_1 | Rep_604_c_1_501 | 588855 | 590291 | + | GH140 |
Gene ID: Rep_604_c_1_495
Type: CAZyme
Location: 581578 - 582597 (+)
Type: CAZyme
Location: 581578 - 582597 (+)
Gene ID: Rep_604_c_1_496
Type:
Location: 582755 - 583099 (+)
Type:
Location: 582755 - 583099 (+)
Gene ID: Rep_604_c_1_497
Type: TC
Location: 583313 - 584014 (+)
Type: TC
Location: 583313 - 584014 (+)
Gene ID: Rep_604_c_1_498
Type: TC
Location: 584019 - 584807 (+)
Type: TC
Location: 584019 - 584807 (+)
Gene ID: Rep_604_c_1_499
Type: pfam
Location: 585397 - 586413 (+)
Type: pfam
Location: 585397 - 586413 (+)
Gene ID: Rep_604_c_1_500
Type: TF
Location: 586515 - 587609 (-)
Type: TF
Location: 586515 - 587609 (-)
Gene ID: Rep_604_c_1_501
Type: CAZyme
Location: 588855 - 590291 (+)
Type: CAZyme
Location: 588855 - 590291 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.