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Cluster: Rep_604_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_604_c_2 Rep_604_c_2_78 87904 88890 + 1.A.13.4.1
pfam Rep_604_c_2 Rep_604_c_2_79 88892 89926 + VWA | DUF1194 | BatA | VWA_2
CAZyme Rep_604_c_2 Rep_604_c_2_80 90224 91909 + GH20
pfam Rep_604_c_2 Rep_604_c_2_81 91906 92991 + Transposase_mut
pfam Rep_604_c_2 Rep_604_c_2_82 93104 94588 - tRNA-synt_2b | HGTP_anticodon | ProRS-C_1
TC Rep_604_c_2 Rep_604_c_2_83 94773 96419 - 1.B.9.4.7
NULL(UNKNOWN) Rep_604_c_2 Rep_604_c_2_84 96621 97952 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_604_c_2 Rep_604_c_2_85 99630 100508 + CE1
TC Rep_604_c_2 Rep_604_c_2_86 100750 101235 + 9.B.35.1.2
Gene ID: Rep_604_c_2_78
Type: TC
Location: 87904 - 88890 (+)
Gene ID: Rep_604_c_2_79
Type: pfam
Location: 88892 - 89926 (+)
Gene ID: Rep_604_c_2_80
Type: CAZyme
Location: 90224 - 91909 (+)
Gene ID: Rep_604_c_2_81
Type: pfam
Location: 91906 - 92991 (+)
Gene ID: Rep_604_c_2_82
Type: pfam
Location: 93104 - 94588 (-)
Gene ID: Rep_604_c_2_83
Type: TC
Location: 94773 - 96419 (-)
Gene ID: Rep_604_c_2_84
Type:
Location: 96621 - 97952 (-)
Gene ID: Rep_604_c_2_85
Type: CAZyme
Location: 99630 - 100508 (+)
Gene ID: Rep_604_c_2_86
Type: TC
Location: 100750 - 101235 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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